LOC110523202


Basic Information

Item Value
gene id LOC110523202
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11919738 ~ 11922926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979096.1
ctatggttatctagattggttctcaattagaggcagctgtttatcgttgtctctgattgggaaccatatttagacaGCCATATTCCTtgagtattttgtgggtgattgtctatgtttaGTTCCCTGTGTCAGCACTATTATTATAATATAGCGTCACGGTGGTTTTGTAAGGTTAAGTTTCTTcatttcattaaagatgtattctcttcacgctgtgccttggtctcattGCTATAACGGACGTGAcaccaacttcaactgtaggtctagAATGTGAAAGTAACGGGAAAAAGCTGCACAACAAAGTTATTTTTGGATaggccaacaacaacaaaaaaacgtaaCATGTTTCTATGAAGTGCTGAAGTTGATGTCAGGTGCTTATCGTGTGTCTGTGAAGACAGGAGGCTCCATCACCATCCCATGTCGCTATGATCTGAGATACAAAACACATGTGAAATACCTGTGTGAAGTAGATTATTTTCAAAGATGCTTCCCTGATGTACATTCTAAGAGCATAAATAAGGCCTCAATCTCTCATTACATCAACAAGCAAACCTTCACTGTGACCATGACTGATCTGAGGACAGAGGACTCTGGAAGTTACCGATGTGCTGTGGAGATCAATGGTGGATCAGATGTCATTATAAAAAGATTCCACCTATCTGTCACTCCAGGTACTCCAGAACTCTATGTGGACCAACAGGATGTGACTGGAGTTGAAGGCGGGAGTGTCATTGTAAATTGTTACTATAGTGACACTGTAAATATTAAGTGGTGCAGGATTGGTGTCAGTGTCTCCTGTATGGATGGGAATTCTGGGACTATAAGCGAAACATCAGTGACCCTACAGCAGACCACTGATGCCCCCAGAAGAAATGTCTTAACGGTGACTATGAGTGGACTGAAGACGGAGAACACTGGCTGGTACAGTAACTCAAGCTCCAACCACTGAACAATCCTCTTTCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAGTCCAAGGACCTGAGGGGGGCAAGGAGAAGGACTCCATGAG
>XM_036979093.1
ctatggttatctagattggttctcaattagaggcagctgtttatcgttgtctctgattgggaaccatatttagacaGCCATATTCCTtgagtattttgtgggtgattgtctatgtttaGTTCCCTGTGTCAGCACTATTATTATAATATAGCGTCACGGTGGTTTTGTAAGGTTAAGTTTCTTcatttcattaaagatgtattctcttcacgctgtgccttggtctcattGCTATAACGGACGTGAcaccaacttcaactgtaggtctagAATGTGAAAGTAACGGGAAAAAGCTGCACAACAAAGTTATTTTTGGATaggccaacaacaacaaaaaaacgtaaCATGTTTCTATGAAGTGCTGAAGTTGATGTCAGGTGCTTATCGTGTGTCTGTGAAGACAGGAGGCTCCATCACCATCCCATGTCGCTATGATCTGAGATACAAAACACATGTGAAATACCTGTGTGAAGTAGATTATTTTCAAAGATGCTTCCCTGATGTACATTCTAAGAGCATAAATAAGGCCTCAATCTCTCATTACATCAACAAGCAAACCTTCACTGTGACCATGACTGATCTGAGGACAGAGGACTCTGGAAGTTACCGATGTGCTGTGGAGATCAATGGTGGATCAGATGTCATTATAAAAAGATTCCACCTATCTGTCACTCCAGGTACTCCAGAACTCTATGTGGACCAACAGGATGTGACTGGAGTTGAAGGCGGGAGTGTCATTGTAAATTGTTACTATAGTGACACTGTAAATATTAAGTGGTGCAGGATTGGTGTCAGTGTCTCCTGTATGGATGGGAATTCTGGGACTATAAGCGAAACATCAGTGACCCTACAGCAGACCACTGATGCCCCCAGAAGAAATGTCTTAACGGTGACTATGAGTGGACTGAAGACGGAGAACACTGGCTGGTACAGGTGTGGAGTGGGAGACCTTATAATGCCTGTTCACATCACTGTCAGACAACAAACCACCACTATGACCATAACTCAAGCTCCAACCACTGAACAATCCTCTTTCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAGTCCAAGGACCTGAGGGGGGCAAGGAGAAGGACTCCATGAGATGGGAAACAACATTTTTCTACCTGCCAAAAATTGGTAATGCTGTGCTTTTCCTCCTGTGTACCATCATTGCTGTTGTGAAGTTCAGAGTAAACTGAATCTGTGTTGAAACTAAAGATGAGTAGAAAACAGATAGGTCTCTTTGGTGAGACCAAGGGACAGATTTACTTTGTTTCATTGTTAATCTTACATACTGAATCATAGTCTTACTGTACTATTGTCTGTTTTATATGTTAAAATGCATGCGTTGTTAATAAACTATAAAAATCTA
>XM_036979094.1
ctatggttatctagattggttctcaattagaggcagctgtttatcgttgtctctgattgggaaccatatttagacaGCCATATTCCTtgagtattttgtgggtgattgtctatgtttaGTTCCCTGTGTCAGCACTATTATTATAATATAGCGTCACGGTGGTTTTGTAAGGTTAAGTTTCTTcatttcattaaagatgtattctcttcacgctgtgccttggtctcattGCTATAACGGACGTGAcaccaacttcaactgtaggtctagAATGTGAAAGTAACGGGAAAAAGCTGCACAACAAAGTTATTTTTGGATaggccaacaacaacaaaaaaacgtaaCATGTTTCTATGAAGTGCTGAAGTTGATGTCAGGTACTGGGACTGGACACATGCTGAAACTCTGAAGATAAGACAAGCTACTGCTCCTATCAATAACACTTCCTGTGCTTATCGTGTGTCTGTGAAGACAGGAGGCTCCATCACCATCCCATGTCGCTATGATCTGAGATACAAAACACATGTGAAATACCTGTGTGAAGTAGATTATTTTCAAAGATGCTTCCCTGATGTACATTCTAAGAGCATAAATAAGGCCTCAATCTCTCATTACATCAACAAGCAAACCTTCACTGTGACCATGACTGATCTGAGGACAGAGGACTCTGGAAGTTACCGATGTGCTGTGGAGATCAATGGTGGATCAGATGTCATTATAAAAAGATTCCACCTATCTGTCACTCCAGGTACTCCAGAACTCTATGTGGACCAACAGGATGTGACTGGAGTTGAAGGCGGGAGTGTCATTGTAAATTGTTACTATAGTGACACTGTAAATATTAAGTGGTGCAGGATTGGTGTCAGTGTCTCCTGTATGGATGGGAATTCTGGGACTATAAGCGAAACATCAGTGACCCTACAGCAGACCACTGATGCCCCCAGAAGAAATGTCTTAACGGTGACTATGAGTGGACTGAAGACGGAGAACACTGGCTGGTACAGGTGTGGAGTGGGAGACCTTATAATGCCTGTTCACATCACTGTCAGACAACAAACCACCACTATGACCATAACTCAAGCTCCAACCACTGAACAATCCTCTTTCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAGTCCAAGGACCTGAGGGGGGCAAGGAGAAGGACTCCATGAGATGGGAAACAACATTTTTCTACCTGCCAAAAATTGGTAATGCTGTGCTTTTCCTCCTGTGTACCATCATTGCTGTTGTGAAGTTCAGAGTAAACTGAATCTGTGTTGAAACTAAAGATGAGTAGAAAACAGATAGGTCTCTTTGGTGAGACCAAGGGACAGATTTACTTTGTTTCATTGTTAATCTTACATACTGAATCATAGTCTTACTGTACTATTGTCTGTTTTATATGTTAAAATGCATGCGTTGTTAATAAACTATAAAAATCTA
>XM_036979095.1
ctatggttatctagattggttctcaattagaggcagctgtttatcgttgtctctgattgggaaccatatttagacaGCCATATTCCTtgagtattttgtgggtgattgtctatgtttaGTTCCCTGTGTCAGCACTATTATTATAATATAGCGTCACGGTGGTTTTGTAAGGTGCTTATCGTGTGTCTGTGAAGACAGGAGGCTCCATCACCATCCCATGTCGCTATGATCTGAGATACAAAACACATGTGAAATACCTGTGTGAAGTAGATTATTTTCAAAGATGCTTCCCTGATGTACATTCTAAGAGCATAAATAAGGCCTCAATCTCTCATTACATCAACAAGCAAACCTTCACTGTGACCATGACTGATCTGAGGACAGAGGACTCTGGAAGTTACCGATGTGCTGTGGAGATCAATGGTGGATCAGATGTCATTATAAAAAGATTCCACCTATCTGTCACTCCAGGTACTCCAGAACTCTATGTGGACCAACAGGATGTGACTGGAGTTGAAGGCGGGAGTGTCATTGTAAATTGTTACTATAGTGACACTGTAAATATTAAGTGGTGCAGGATTGGTGTCAGTGTCTCCTGTATGGATGGGAATTCTGGGACTATAAGCGAAACATCAGTGACCCTACAGCAGACCACTGATGCCCCCAGAAGAAATGTCTTAACGGTGACTATGAGTGGACTGAAGACGGAGAACACTGGCTGGTACAGGTGTGGAGTGGGAGACCTTATAATGCCTGTTCACATCACTGTCAGACAACAAACCACCACTATGACCATAACTCAAGCTCCAACCACTGAACAATCCTCTTTCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAGTCCAAGGACCTGAGGGGGGCAAGGAGAAGGACTCCATGAGATGGGAAACAACATTTTTCTACCTGCCAAAAATTGGTAATGCTGTGCTTTTCCTCCTGTGTACCATCATTGCTGTTGTGAAGTTCAGAGTAAACTGAATCTGTGTTGAAACTAAAGATGAGTAGAAAACAGATAGGTCTCTTTGGTGAGACCAAGGGACAGATTTACTTTGTTTCATTGTTAATCTTACATACTGAATCATAGTCTTACTGTACTATTGTCTGTTTTATATGTTAAAATGCATGCGTTGTTAATAAACTATAAAAATCTA

Function

NR:

description
polymeric immunoglobulin receptor-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979096.1 False 1045 mRNA 0.43 4 11919738 11921477
XM_036979093.1 False 1383 mRNA 0.41 5 11919738 11922926
XM_036979094.1 False 1454 mRNA 0.41 5 11919738 11922926
XM_036979095.1 True 1177 mRNA 0.42 5 11919738 11922926

Neighbor

gene id symbol gene type direction distance location
lmnb1 lmnb1 coding upstream 64906 11832909 ~ 11854832 (+)
phax phax coding upstream 111662 11803920 ~ 11808076 (+)
trnaa-agc-2 NA coding upstream 318206 11601460 ~ 11601532 (+)
LOC110523192 plk2 coding upstream 406476 11507689 ~ 11513262 (+)
LOC110524952 NA coding upstream 412454 11502643 ~ 11507284 (+)
megf10 megf10 coding downstream 24075 11947001 ~ 12051563 (+)
prrc1 prrc1 coding downstream 134026 12056952 ~ 12093392 (+)
LOC110523206 ctxn3 coding downstream 190777 12113703 ~ 12134568 (+)
slc12a2 nkcc1a coding downstream 257842 12180768 ~ 12261242 (+)
LOC110523213 LOC106571108 coding downstream 394182 12317108 ~ 12321576 (+)
G367682 cssa01h5orf63 non-coding upstream 36525 11880329 ~ 11883213 (+)
G367670 NA non-coding upstream 101550 11817847 ~ 11818188 (+)
G367663 LOC106571668 non-coding upstream 109396 11809282 ~ 11810342 (+)
G367654 aldh7a1 non-coding upstream 114372 11787255 ~ 11805366 (+)
G367653 NA non-coding upstream 134029 11785204 ~ 11785709 (+)
G367809 NA non-coding downstream 2012 11924938 ~ 11930233 (+)
G367840 NA non-coding downstream 70741 11993667 ~ 11994319 (+)
G367867 NA non-coding downstream 148487 12071413 ~ 12147440 (+)
G367933 NA non-coding downstream 253709 12176635 ~ 12176853 (+)
G367934 NA non-coding downstream 254908 12177834 ~ 12178295 (+)
G367684 NA other upstream 39703 11878329 ~ 11880035 (+)
G366973 NA other upstream 491028 11425642 ~ 11428710 (+)
G366748 NA other upstream 942586 10976682 ~ 10977152 (+)
G365197 NA other upstream 2070584 9848703 ~ 9849154 (+)
G364850 NA other upstream 2690507 9228838 ~ 9229231 (+)
G368440 NA other downstream 1185770 13108696 ~ 13109134 (+)
G369763 NA other downstream 1842321 13765247 ~ 13769296 (+)
G370360 NA other downstream 2332877 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 2398178 14321104 ~ 14325895 (+)
G370414 NA other downstream 2444746 14367672 ~ 14368161 (+)

Expression


Co-expression Network