RNA id: XM_036979093.1


Basic Information

Item Value
RNA id XM_036979093.1
length 1383
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110523202
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11919738 ~ 11922926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatggttatctagattggttctcaattagaggcagctgtttatcgttgtctctgattgggaaccatatttagacaGCCATATTCCTtgagtattttgtgggtgattgtctatgtttaGTTCCCTGTGTCAGCACTATTATTATAATATAGCGTCACGGTGGTTTTGTAAGGTTAAGTTTCTTcatttcattaaagatgtattctcttcacgctgtgccttggtctcattGCTATAACGGACGTGAcaccaacttcaactgtaggtctagAATGTGAAAGTAACGGGAAAAAGCTGCACAACAAAGTTATTTTTGGATaggccaacaacaacaaaaaaacgtaaCATGTTTCTATGAAGTGCTGAAGTTGATGTCAGGTGCTTATCGTGTGTCTGTGAAGACAGGAGGCTCCATCACCATCCCATGTCGCTATGATCTGAGATACAAAACACATGTGAAATACCTGTGTGAAGTAGATTATTTTCAAAGATGCTTCCCTGATGTACATTCTAAGAGCATAAATAAGGCCTCAATCTCTCATTACATCAACAAGCAAACCTTCACTGTGACCATGACTGATCTGAGGACAGAGGACTCTGGAAGTTACCGATGTGCTGTGGAGATCAATGGTGGATCAGATGTCATTATAAAAAGATTCCACCTATCTGTCACTCCAGGTACTCCAGAACTCTATGTGGACCAACAGGATGTGACTGGAGTTGAAGGCGGGAGTGTCATTGTAAATTGTTACTATAGTGACACTGTAAATATTAAGTGGTGCAGGATTGGTGTCAGTGTCTCCTGTATGGATGGGAATTCTGGGACTATAAGCGAAACATCAGTGACCCTACAGCAGACCACTGATGCCCCCAGAAGAAATGTCTTAACGGTGACTATGAGTGGACTGAAGACGGAGAACACTGGCTGGTACAGGTGTGGAGTGGGAGACCTTATAATGCCTGTTCACATCACTGTCAGACAACAAACCACCACTATGACCATAACTCAAGCTCCAACCACTGAACAATCCTCTTTCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAGTCCAAGGACCTGAGGGGGGCAAGGAGAAGGACTCCATGAGATGGGAAACAACATTTTTCTACCTGCCAAAAATTGGTAATGCTGTGCTTTTCCTCCTGTGTACCATCATTGCTGTTGTGAAGTTCAGAGTAAACTGAATCTGTGTTGAAACTAAAGATGAGTAGAAAACAGATAGGTCTCTTTGGTGAGACCAAGGGACAGATTTACTTTGTTTCATTGTTAATCTTACATACTGAATCATAGTCTTACTGTACTATTGTCTGTTTTATATGTTAAAATGCATGCGTTGTTAATAAACTATAAAAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417907 lncRNA upstream 36525 11880329 ~ 11883213 (+) True G367682
TU417894 lncRNA upstream 101550 11817847 ~ 11818188 (+) True G367670
TU417887 lncRNA upstream 109396 11809282 ~ 11810342 (+) True G367663
TU417876 lncRNA upstream 125369 11791142 ~ 11794369 (+) False G367654
TU418051 lncRNA downstream 2012 11924938 ~ 11930233 (+) True G367809
TU418087 lncRNA downstream 70741 11993667 ~ 11994319 (+) True G367840
TU418114 lncRNA downstream 148487 12071413 ~ 12147440 (+) True G367867
TU418191 lncRNA downstream 253709 12176635 ~ 12176853 (+) True G367933
TU418192 lncRNA downstream 254908 12177834 ~ 12178295 (+) True G367934
XM_021601682.2 mRNA upstream 64906 11832909 ~ 11854832 (+) False lmnb1
XM_021601681.2 mRNA upstream 64906 11832976 ~ 11854832 (+) True lmnb1
XM_021601680.2 mRNA upstream 111662 11803920 ~ 11808076 (+) True phax
trnaa-agc-2 mRNA upstream 318206 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601667.2 mRNA upstream 406476 11507689 ~ 11513262 (+) True LOC110523192
XM_036976788.1 mRNA downstream 24075 11947001 ~ 12038547 (+) False megf10
XM_021601689.2 mRNA downstream 24077 11947003 ~ 12051563 (+) False megf10
XM_021601691.2 mRNA downstream 24077 11947003 ~ 12051563 (+) True megf10
XM_021601692.2 mRNA downstream 134026 12056952 ~ 12093392 (+) False prrc1
XM_036976790.1 mRNA downstream 134026 12056952 ~ 12093392 (+) False prrc1
TU417909 other upstream 39703 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 491028 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 942586 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 2070584 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2690507 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 1185770 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 1842321 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2332877 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2398178 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 2444746 14367672 ~ 14368161 (+) True G370414

Expression Profile