RNA id: TU416883


Basic Information

Item Value
RNA id TU416883
length 390
RNA type TUCP
GC content 0.42
exon number 2
gene id G366748
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10976682 ~ 10977152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcatcacagtaaaattaactttcagatacccatcaaaaatggcaaaacggaaggtggatactgagaaccgggggtttcaaacaaggtgggagtcggagtatatgttcacgaaggtagctggaaaacctgtgtgtcttctgtgtggagaaagtgtggcggtactgaaaaagtataatctgagacgacattatgaaacgaaacacgcggacaaaaacaagaatatggacatggaacaaaggctacaaaaggccagttttattttggcagaagagatcgctaaatcagcccggccatttacggagggggatttcatcaaaaactgcatgattaaagtttgtgacgaagtttgcccagaaaaaaggcaactctttttaaatgtgagtctgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416874 lncRNA upstream 8601 10967326 ~ 10968081 (+) True G366739
TU416813 lncRNA upstream 23746 10952665 ~ 10952936 (+) True G366684
TU416836 lncRNA upstream 46313 10930074 ~ 10930369 (+) True G366703
TU416837 lncRNA upstream 46952 10929445 ~ 10929730 (+) True G366704
TU416834 lncRNA upstream 48209 10924894 ~ 10928473 (+) True purg
TU416807 lncRNA downstream 27523 11004675 ~ 11005600 (+) True G366678
TU416810 lncRNA downstream 28582 11005734 ~ 11006030 (+) True G366681
TU416901 lncRNA downstream 35031 11012183 ~ 11012531 (+) True G366766
TU416948 lncRNA downstream 60899 11038051 ~ 11038367 (+) True G366786
TU416959 lncRNA downstream 72222 11049374 ~ 11051095 (+) True G366797
XM_021601659.2 mRNA upstream 12960 10953016 ~ 10963722 (+) True ppp2cb
XM_021601657.2 mRNA upstream 25481 10932267 ~ 10951201 (+) False LOC110523183
XM_036976767.1 mRNA upstream 25481 10932407 ~ 10951201 (+) False LOC110523183
XM_036976768.1 mRNA upstream 25481 10934632 ~ 10951201 (+) True LOC110523183
XM_036976769.1 mRNA upstream 38071 10931536 ~ 10938611 (+) False LOC110523183
XM_021601662.2 mRNA downstream 7568 10984720 ~ 11004641 (+) True depdc1b
XM_036976772.1 mRNA downstream 48949 11026101 ~ 11418933 (+) False LOC110523188
XM_036976773.1 mRNA downstream 48950 11026102 ~ 11418933 (+) False LOC110523188
XM_036976775.1 mRNA downstream 136589 11113741 ~ 11418933 (+) False LOC110523188
XM_036976778.1 mRNA downstream 136591 11113743 ~ 11418933 (+) False LOC110523188
TU415150 other upstream 1127528 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1747451 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2130566 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 3057117 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 3284168 7690440 ~ 7692514 (+) True G362554
TU417154 other downstream 448490 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 901177 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2131544 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2788095 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 3278651 14255803 ~ 14259133 (+) True G370360

Expression Profile