RNA id: TU417154



Basic Information


Item Value
RNA id TU417154
length 651
RNA type TUCP
GC content 0.50
exon number 3
gene id G366973
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11425642 ~ 11428710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggatatatacagggggtaccggtaccgagtcaatgtggaggttatatacaggaggtaccggtacagagtcaatgtggaggttatatacagggggtaccggtacagagtcaatgtggaggttatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggttatatacagggggtaccggtaccgagtcaatgtggaggttatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggttatatacagggggtaccggtacagagtcaatgtggaggctatatacaggaggtaccggtactgagtcaatgtggaggctatatacagggggtaccggtaccgagtcaatgtggaggttatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccagtactgagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacaggaggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU417149 lncRNA upstream 2841 11422577 ~ 11422801 (+) True G366969
TU416938 lncRNA upstream 159645 11146283 ~ 11265997 (+) True G366777
TU417045 lncRNA upstream 256205 11169065 ~ 11169437 (+) True G366874
TU417028 lncRNA upstream 275729 11149623 ~ 11149913 (+) True G366861
TU416959 lncRNA upstream 374547 11049374 ~ 11051095 (+) True G366797
TU417158 lncRNA downstream 4957 11433667 ~ 11437320 (+) True G366977
TU417195 lncRNA downstream 58738 11487448 ~ 11488048 (+) True G367014
TU417630 lncRNA downstream 113888 11542598 ~ 11542839 (+) True G367420
TU417634 lncRNA downstream 118334 11547044 ~ 11547288 (+) True G367424
TU417641 lncRNA downstream 123785 11552495 ~ 11552834 (+) True G367431
XM_036976772.1 mRNA upstream 6709 11026101 ~ 11418933 (+) False LOC110523188
XM_036976773.1 mRNA upstream 6709 11026102 ~ 11418933 (+) False LOC110523188
XM_036976775.1 mRNA upstream 6709 11113741 ~ 11418933 (+) False LOC110523188
XM_036976778.1 mRNA upstream 6709 11113743 ~ 11418933 (+) False LOC110523188
XM_036976776.1 mRNA upstream 6709 11258781 ~ 11418933 (+) False LOC110523188
XR_005051640.1 mRNA downstream 73933 11502643 ~ 11507284 (+) True LOC110524952
XM_021601667.2 mRNA downstream 78979 11507689 ~ 11513262 (+) True LOC110523192
trnaa-agc-2 mRNA downstream 172750 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601680.2 mRNA downstream 375210 11803920 ~ 11808076 (+) True phax
XM_021601682.2 mRNA downstream 404199 11832909 ~ 11854832 (+) False lmnb1
TU416883 other upstream 448490 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1576488 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2196411 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2579526 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 3506077 7918922 ~ 7919565 (+) True G362662
TU417909 other downstream 449619 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1679986 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2336537 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2827093 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2892394 14321104 ~ 14325895 (+) True G370382

Expression Profile