RNA id: TU420951


Basic Information

Item Value
RNA id TU420951
length 641
RNA type TUCP
GC content 0.52
exon number 2
gene id G370382
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14321104 ~ 14325895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGCGACCACACATCTTGAGTATTTAAGACGTATTCTACAGGATCTACAGAATGAGACTCTGGAAAATGCTGTGTTTAGGCTGAAAAATGTGTGTGGGTATTGCGACAAAGACACtgcaatcagaatgtggacaggCATTTCTACCACTTCAACTTTCAATTCCATCAGTACTCCAGGCAACGCATAGGACATTAATATGTCTGAACGAGCATGAGTGTGTGAAGGTTCTGGTCTGGGagggtgtcctgtgtgtgtgttacctgaaggCGTACGTCCTCTGGTGCCAGCTGAGCTGGCCACGGATGCTGTAGGCGATGGTGGTGACAAACTCTCCTCCCAGGCCCAGCTCGGAGCACAGCTTGAGGGCAAACGTCTCCGGAGAGTTCTCCCTCTCCGACATGTCCCACTCAAACTGGTCCACCAAGGAGATGTTCCCCACGTGGATATTCaGCTGGCGGATGGCTGAGGCAATGGCCGGGACGAAGGCCAGTGGGTTCAGGTCCAGGTCGTCACACAGGATCTCTGCAAACATCTCCGGGGTCATCAGCTTCTCTGGAGGAGCGGGAGAGGATGGTGGAAGAGTGAAGGGTTGAGTCTCAATAGGCTAAAGAGGCTTCCTCATCTACTTTCCTACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421015 lncRNA upstream 8531 14312169 ~ 14312573 (+) True G370444
TU421014 lncRNA upstream 9262 14311549 ~ 14311842 (+) True G370443
TU421013 lncRNA upstream 10599 14310022 ~ 14310505 (+) True G370442
TU420551 lncRNA upstream 69906 14244259 ~ 14251198 (+) True G370022
TU420500 lncRNA upstream 89519 14226185 ~ 14231585 (+) True LOC110523253
TU421023 lncRNA downstream 13454 14339349 ~ 14339582 (+) True G370452
TU421024 lncRNA downstream 17452 14343347 ~ 14343596 (+) True G370453
TU421025 lncRNA downstream 17778 14343673 ~ 14343947 (+) True G370454
TU420999 lncRNA downstream 19089 14344984 ~ 14345550 (+) True G370428
TU421026 lncRNA downstream 24945 14350840 ~ 14351142 (+) True G370455
XM_021601785.2 mRNA upstream 12385 14272305 ~ 14308719 (+) True mmp11b
XM_036976848.1 mRNA upstream 91796 14148432 ~ 14229308 (+) False LOC110523253
XM_036976847.1 mRNA upstream 91796 14172563 ~ 14229308 (+) False LOC110523253
XM_036976845.1 mRNA upstream 91796 14175105 ~ 14229308 (+) False LOC110523253
XM_036976846.1 mRNA upstream 91796 14175440 ~ 14229308 (+) False LOC110523253
XM_021601787.2 mRNA downstream 19738 14345633 ~ 14347412 (+) True LOC110523258
XM_021601789.2 mRNA downstream 25558 14351453 ~ 14367540 (+) False LOC110523259
XM_021601790.2 mRNA downstream 25558 14351453 ~ 14367540 (+) True LOC110523259
XM_021601793.2 mRNA downstream 51064 14376959 ~ 14429468 (+) False LOC110523261
XM_021601791.2 mRNA downstream 56573 14382468 ~ 14429468 (+) False LOC110523261
TU420927 other upstream 61971 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 551808 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1211970 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 2441069 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2892394 11425642 ~ 11428710 (+) True G366973
TU420985 other downstream 41777 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 478766 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 722283 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 798395 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1465664 15791559 ~ 15795122 (+) False G371615

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU289808 True 4666 lncRNA 0.38 2 NC_047609.1 22244591 ~ 22249375 (-)