LOC110519479 (LOC106596183)


Basic Information

Item Value
gene id LOC110519479
gene name LOC106596183
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15047739 ~ 15054353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976895.1
TTTTGTGATTGCTGCCCTGCCCACTATTTAACTGGAAGGAGAGCTATTCCACACAATTGTTTATGCTTTTTCTTTGGTTGTTTTTTTTCCAAATCTTGGGGGACAATTGTTGTTGCAACATGGTTTGGTTTCTGATTCTCATCTGGTTTGTCCAAGTGGGCAGTGTTCCCATCACCAATTTCACAAATGCTACTACTTCAAATGCTACTTTCCCTGCCACAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTGTCGGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGGTCAACGATTATCTGGTGGACAGAAAGGTAACTATACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCGTATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACTATGGAACATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACGCGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCCAAGAAGATTTCAACACCGCTGCTGTCAACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTG
>TU421788
TTCAAGTTTATGGCCTGTCTATCAATAAACATAATGATATTACAAAATAAGTTTGTTCACAATTTCTTTTAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTGTCGGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGGTCAACGATTATCTGGTGGACAGAAAGGTAACTATACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCGTATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACT

Function

NR:

description
low choriolytic enzyme-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976895.1 False 1181 mRNA 0.46 10 15047739 15054353
TU421788 True 636 TUCP 0.47 6 15048178 15053556

Neighbor

gene id symbol gene type direction distance location
LOC110523290 LOC106596183 coding upstream 13150 15027803 ~ 15034589 (+)
LOC110518391 LOC106596183 coding upstream 33127 15007790 ~ 15014612 (+)
dnlz dnlz coding upstream 48303 14995248 ~ 14999436 (+)
dolk dolk coding upstream 131061 14901565 ~ 14916678 (+)
cdk5rap2 LOC106570081 coding upstream 155545 14819309 ~ 14892194 (+)
LOC110518158 LOC106596183 coding downstream 11274 15065627 ~ 15075700 (+)
LOC110519478 LOC106596183 coding downstream 32525 15086878 ~ 15096757 (+)
uck1 LOC106569943 coding downstream 62871 15117198 ~ 15187954 (+)
LOC110523300 LOC105028392 coding downstream 410202 15464555 ~ 15591443 (+)
st6galnac4 st6galnac4 coding downstream 695838 15750191 ~ 15756190 (+)
G371113 NA non-coding upstream 74665 14972729 ~ 14973074 (+)
G371111 NA non-coding upstream 75949 14971481 ~ 14971790 (+)
G371101 NA non-coding upstream 84808 14962632 ~ 14962931 (+)
G371094 NA non-coding upstream 88244 14959238 ~ 14959495 (+)
G370961 NA non-coding upstream 88997 14958511 ~ 14958742 (+)
G371170 NA non-coding downstream 12672 15067025 ~ 15088540 (+)
G371171 NA non-coding downstream 23354 15077707 ~ 15100378 (+)
G371172 LOC106569911 non-coding downstream 26339 15080692 ~ 15102326 (+)
G371139 NA non-coding downstream 36614 15090967 ~ 15150407 (+)
LOC118964542 LOC106569496 other upstream 242268 14798616 ~ 14805526 (+)
G370414 NA other upstream 679578 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 721844 14321104 ~ 14325895 (+)
G370360 NA other upstream 788606 14255803 ~ 14259133 (+)
G369763 NA other upstream 1278443 13765247 ~ 13769296 (+)
G371182 NA other downstream 69937 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 737206 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1165253 16218328 ~ 16220933 (+)
G372373 NA other downstream 1681289 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1816081 16870434 ~ 16882185 (+)

Expression


Co-expression Network