LOC110519478 (LOC106596183)


Basic Information

Item Value
gene id LOC110519478
gene name LOC106596183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15086878 ~ 15096757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976887.1
CTATTTAACTGGAAGGAGAGCTATTCCACACAATTGTTTATGCGTTTTCTATGGTTGTTTTTTTTTCCAAATCTTGGGGGACAATTGTTGTTGCAACATGGTTTGGTTTCTGATTCTCATCTGGTTTGTCCAAGTGGGCAGTGTTCCCATCACCAATTTCACAAATGCTACTACTTCAAATGCTACTTTCCCTGCCACAGTGGACAATTCTACATACACCAACAATTCTACAAATATGACTTTCACTGCCACAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTTTCAGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGGTCAACGATTATCTGGTGGACAGAAAGGTAACTATACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCGTATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACTACGGAACATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACACGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCCAAGAAGATTTCAACACCGCTGCTGTCAACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGTAGGTAGTTTAATTTGTCCTGTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCA

Function

NR:

description
high choriolytic enzyme 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976887.1 True 1210 mRNA 0.45 11 15086878 15096757

Neighbor

gene id symbol gene type direction distance location
LOC110518158 LOC106596183 coding upstream 11320 15065627 ~ 15075700 (+)
LOC110519479 LOC106596183 coding upstream 32525 15047739 ~ 15054353 (+)
LOC110523290 LOC106596183 coding upstream 52289 15027803 ~ 15034589 (+)
LOC110518391 LOC106596183 coding upstream 72266 15007790 ~ 15014612 (+)
dnlz dnlz coding upstream 87442 14995248 ~ 14999436 (+)
uck1 LOC106569943 coding downstream 20467 15117198 ~ 15187954 (+)
LOC110523300 LOC105028392 coding downstream 367798 15464555 ~ 15591443 (+)
st6galnac4 st6galnac4 coding downstream 653434 15750191 ~ 15756190 (+)
st6galnac6 sia7f coding downstream 659502 15756259 ~ 15772026 (+)
LOC110523312 surf1 coding downstream 692038 15788795 ~ 15791028 (+)
G371159 NA non-coding upstream 30660 15015821 ~ 15056218 (+)
G371158 NA non-coding upstream 35942 15010816 ~ 15050936 (+)
G371113 NA non-coding upstream 113804 14972729 ~ 14973074 (+)
G371111 NA non-coding upstream 115088 14971481 ~ 14971790 (+)
G371206 NA non-coding downstream 96192 15192949 ~ 15193278 (+)
G371367 NA non-coding downstream 159345 15256102 ~ 15256318 (+)
G371420 NA non-coding downstream 250371 15347128 ~ 15347847 (+)
G371452 NA non-coding downstream 321736 15418493 ~ 15418732 (+)
LOC118964542 LOC106569496 other upstream 281407 14798616 ~ 14805526 (+)
G370414 NA other upstream 718717 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 760983 14321104 ~ 14325895 (+)
G370360 NA other upstream 827745 14255803 ~ 14259133 (+)
G371182 NA other downstream 27533 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 694802 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1122849 16218328 ~ 16220933 (+)
G372373 NA other downstream 1638885 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1773677 16870434 ~ 16882185 (+)

Expression


Co-expression Network