Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110523312 |
| gene name | surf1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 15788795 ~ 15791028 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| surf1 | Enables cytochrome-c oxidase activity. Acts upstream of or within embryonic organ development and spinal cord motor neuron differentiation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4K; Leigh disease; and cytochrome-c oxidase deficiency disease. Orthologous to human SURF1 (SURF1 cytochrome c oxidase assembly factor). |
| description |
|---|
| surfeit locus protein 1 |
| id | name | namespace |
|---|---|---|
| GO:0021522 | spinal cord motor neuron differentiation | biological_process |
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0048568 | embryonic organ development | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0004129 | cytochrome-c oxidase activity | molecular_function |
| id | description |
|---|---|
| K14998 | SURF1, SHY1; surfeit locus 1 family protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021601905.2 | True | 1214 | mRNA | 0.47 | 9 | 15788795 | 15791028 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| st6galnac6 | sia7f | coding | upstream | 16769 | 15756259 ~ 15772026 (+) |
| st6galnac4 | st6galnac4 | coding | upstream | 32605 | 15750191 ~ 15756190 (+) |
| LOC110523300 | LOC105028392 | coding | upstream | 197352 | 15464555 ~ 15591443 (+) |
| uck1 | LOC106569943 | coding | upstream | 643275 | 15117198 ~ 15187954 (+) |
| LOC110519478 | LOC106596183 | coding | upstream | 692038 | 15086878 ~ 15096757 (+) |
| med22 | med22 | coding | downstream | 5149 | 15796177 ~ 15810502 (+) |
| usp20 | LOC106569850 | coding | downstream | 25772 | 15816800 ~ 15839459 (+) |
| LOC118964570 | NA | coding | downstream | 38505 | 15829533 ~ 15831741 (+) |
| ptges | ptges | coding | downstream | 61541 | 15852569 ~ 15858360 (+) |
| LOC110523326 | dusp26 | coding | downstream | 643235 | 16434263 ~ 16437732 (+) |
| G371612 | NA | non-coding | upstream | 74200 | 15714329 ~ 15714595 (+) |
| G371610 | NA | non-coding | upstream | 75594 | 15712970 ~ 15713201 (+) |
| G371598 | NA | non-coding | upstream | 90104 | 15690051 ~ 15698691 (+) |
| G371597 | NA | non-coding | upstream | 100348 | 15688226 ~ 15688447 (+) |
| G371567 | LOC106569805 | non-coding | upstream | 137359 | 15650978 ~ 15651436 (+) |
| G371615 | LOC100194725 | non-coding | downstream | 531 | 15791559 ~ 15795122 (+) |
| G371632 | NA | non-coding | downstream | 24177 | 15815205 ~ 15815749 (+) |
| G371639 | NA | non-coding | downstream | 60342 | 15851370 ~ 15851721 (+) |
| G371653 | NA | non-coding | downstream | 78745 | 15869773 ~ 15870026 (+) |
| G371656 | NA | non-coding | downstream | 96210 | 15887238 ~ 15916078 (+) |
| G371182 | NA | other | upstream | 659978 | 15124290 ~ 15128817 (+) |
| LOC110519479 | LOC106596183 | other | upstream | 735239 | 15047739 ~ 15054353 (+) |
| LOC118964542 | LOC106569496 | other | upstream | 983324 | 14798616 ~ 14805526 (+) |
| G370414 | NA | other | upstream | 1420634 | 14367672 ~ 14368161 (+) |
| G370382 | smarcb1 | other | upstream | 1462900 | 14321104 ~ 14325895 (+) |
| G372281 | LOC106569177 | other | downstream | 428578 | 16218328 ~ 16220933 (+) |
| G372373 | NA | other | downstream | 944614 | 16735642 ~ 16738500 (+) |
| G372618 | LOC105030512 | other | downstream | 1079406 | 16870434 ~ 16882185 (+) |
| G373726 | NA | other | downstream | 1913085 | 17704113 ~ 17707757 (+) |
