RNA id: XM_021601785.2


Basic Information

Item Value
RNA id XM_021601785.2
length 3723
RNA type mRNA
GC content 0.45
exon number 8
gene id mmp11b
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14272305 ~ 14308719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACAAAGAAATAAGCGAGTATAAAATCCCCCTATGAGACACATCTCCGTCATTCACTGACTCCACTTCATCCCGCTCACATCCTCCGCCCTCTCTATACCCAAGGTGTGCTCAAGCGCGGTCAAACTGCGAGTCCGCTCCGAATCAAAAGATGATGCCGTCTCTTTGGTTTTTCTGTAGCATCTTTGCGTTGCACCTCTTGCTCTGCATTCATTCTCTGCCAGTACCGGAGTGGAGAGCCAGCAACAGGTACAAAGCCGCGGCGGGATGGCCTCAGAAGACTCACCCATATGGCCTGAAGAAGACGACAAGATTTGATCATACTCAGGACACTCTGAAGGAACAATTGCACCTGTCGGGAGGTGTCTATCCAGAGACTGTGTTGTCATGGAATGGCACAGAGTCAATCTGGAATCGGCCTCGCTGTGGTGTTCCAGACTATCCTACTCAGAAGCAAAGTGGCATCTCGGACTACCACATGACGAAGGGGGGCACCTTTGGAGGAAAGCAGCGGCGGAAGCGCTTCGTTGTCTTTGGGGGGCGCTGGGACAAGACTGACCTCACCTACAAGATCATGCGCTTCCCCTGGCAGTTGAGTAATGAGAAAGTCCGTCACATCTTGCAGGAGGCTCTGCGTGTGTGGAGTGAAGTCACACCCTTGAAGTTCACTGAGGTCAGCAGTGGGAGAGCTGACATCATCATCGACTTTACCAGGTACTGGCATGGTGATAACCTGCCTTTCGATGGTCCTGGAGGCATTCTGGCCCATGCCTTTTTCcccagaactcacagggcaggcgaCATCCACTTTGACTATGATGAGAGTTGGACAGTGGGAAACAGCATGGGCACGGATCTCCTGCAGGTGGCGGCCCATGAGTTTGGCCACGTCCTCGGCCTCCAGCATTCCCTGGTCGAAGGAGCCATCATGTCCCCCTTCTACAGCTTCTCCTATCCCCTGGAGCTGAGCGACGATGACAAGCAGGGCATCCAATACCTGTATGGTCCGCTGCGAAAAGCCCCTCCCGTCATCACAGAGACCAATGAGATCGAAACAACTGTGCCAGATCCCTGCAGGACTAACTTTGATGCCGTGTCAATGATCAGAGGGGAGATGTTCTTCTTCAAGTCCCGCTACGTGTGGCGTATCCGTGATGGCCAACTGCAGGCGGGGTACCCGGCGCTAGCAACACGCCACTGGAGGGGGATCCCCGACAACATCGATGCGGCCTACGAAGACAAGACGGGAAACAGCTGGTTCTTCCAAGGTGACAGTTACTGGGTGTTTGACGCGGAGAGGAGGATCACGGGGCCGGACTCAGTGCGTCGGCTGGGCCTTCAAGTGTCGGACATCCAAGCAGCCCTCATGTGGGGCGAGGACAAGGCCCAGAAGACCTACCTCTTCAAGTCGGGCACCTACTGGCGCTTCAGCCCCCTGGAGAACCGGGTGGACACAGCACACCCTCGTAGCATGCAGGACTGGAGGGGCATCCCCAAGGACATTGACGCAGCCTTCCAGGACCGATATGGCTTTGCTCATTTCCTGAGTGGGAGACAGTATTGGAAGTTTGACCCCGTGGAGGTGAAGGTTCTGGAAGGATACCCCCGCTATATCGGCATGGACTTCTTTGGCTGCCCTGCTTCCTTTTATCGATAAAGCCAGGAAGAGTCCATATCGCCCCAAGAGGTGAATGGAATATCAGGGCCATCTTTATTTTTTTGCTCTTAAGACTAATGTTGTTCCACTGGGACTTTAGACTGATACAATTACATCATTGTGTAACATAAACAGGATGACTGTTGATTTTGGTCTAATGGAGGTCAGGACTTGATGCTATTGGTTGAAACCTTCATTatgaccccagtctgaggtctgggGCAGTCTGAAGACCAATAGAAATTGAGGTCATAATTCAAAGGGTGAATTGAGGACATTTAGTTTCATCATCATCCACAATATGATAATAGCTGGTTTGAAATCGATGCACACTGTTTGAGAGATACGTTAAAGAGCGAACGGCCAGCTAACAGAAAAACAATGTGCCCAACTGGTATTTGTAAATGGACATTTTCGTTCAAGATAAGTAACTTCAATACTTTTGTTCACGATAATCATAACCCAATTTTAATCAATAGGCAGCTTTTTCTCAAGACGAATGCTTACCTCTGCATCAAATAATACGTTTTGGTATgctatatgtttttattttttcagAACAAAACCTTTTGTAATCGTCTTTAGCCTCTGGTACATACTATTTAACATGGCATTTAAAAGTAACATTTTACATAGGCTCATCTTTTCAAATCCGTAGGAACAGTGTAGTTACAGTATTATTTCAATACTCTATGAGTACTTTTCTCTATGAAGggaaatgttaaaaaaaattcTACCTCATATTCATCATCACCAGCACcaaccccaacatcaacatatgtgaaaatgcaCGTTTCTatgttttttataaaaaaatatagagGAAGCTTAAGTGTGTCACATGACATCATCGGTGTGCATCATGTGatttttaaccaattatgagtaggcattgcctactaattgtCGACTaatggttgatgatgtcattggaaacacttatttttctctatattttttaatacaaaacatagaaaaccacaattttcacatacagtatgttgatgtTGGGATGGTGCTGgcgatgatgaatatgaagttgaacattTTAGATATGTCCCTTTTAAAAACTACAACCGGTGCACTAGAAAAGTGAGGTGATAGTTCCATGTTTCTTATTGGTGCTCATCGCCCTTTCCATCGACAGCCAATGATACTCTTCTCAGGAAAAAGTACATTTAACAAACTATACCCtctgaattgttttttttttgcttgaTGTTTAGCCTTGATTCTTATTTATTGCTGTTTATGTGTTGTCAAAAATATTTTACCCACAGATGAGTCTCAAGTATTTATCTGTGCAGTCCTGCTTTCTTTTCTGCCATTGTTTAGACAAAACCCATCAGGTAGCAGTGTAAACCTATTTGAGAGGGACACACATTTTCTCTCCGGCCTCACTGAGCTCTCTATTTCACACACAGCTGCTAAAACTGACTCAACAATGAAGGTAAAGATGTACCTCAAATAGAGGGCTTTATCTTTAACAGTTAAAGGGATATTTCACTCCAAAATCAATGTTTGATAGACTTTTTTATACCTCAAAAGTAGGCCATCTGTTTTGTAGATCCAGCCATATGCCACTATCCAAAATGAAAGGTGTTAATGCATATAGCTGGAGGAGTGTAGATTCATCTTGACATTTTTTTGGTCTGAAAAGATCTGACAAAATTTGATTTGGGAGTATAACGTCCCTTTATTGATGTGATGATTTTACAGTGGTGAAAGCCAAGCATTGCATATCCAAAGTTGTCACGGTGATACCTCATCACGTAAAACGTCCTTCAGTTCTTTTACAAACTGCTCCTTCCAAGATGATGCTGTAAACCTTTTTCATGTTGTAGCGTGGAACCATTTGTCATGCAGCTAGCCTCAATTGCTAGTCATTGATGCTTCAATGTGTCAGTGCAGGCCACTGATACAATTTCCTCACTCTTTTTGATATGTTGTGATGTCATTGACTGCAAGATAACTATTTCATAAAGCTTGCACTGGTAGTTTTGGTGTCAGAGCATTGTCTGTAGAGTTATGTCTCGCGAACACTGTTTTCTTTTTTACCATGTATC

Function

GO: NA

KEGG:

id description
K07993 MMP11; matrix metalloproteinase-11 (stromelysin 3)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420551 lncRNA upstream 21107 14244259 ~ 14251198 (+) True G370022
TU420500 lncRNA upstream 40720 14226185 ~ 14231585 (+) True LOC110523253
TU420501 lncRNA upstream 124761 14145981 ~ 14147544 (+) False G369974
TU420502 lncRNA upstream 124761 14146792 ~ 14147544 (+) True G369974
TU420495 lncRNA upstream 127201 14143417 ~ 14145104 (+) True G369972
TU421013 lncRNA downstream 1303 14310022 ~ 14310505 (+) True G370442
TU421014 lncRNA downstream 2830 14311549 ~ 14311842 (+) True G370443
TU421015 lncRNA downstream 3450 14312169 ~ 14312573 (+) True G370444
TU421023 lncRNA downstream 30630 14339349 ~ 14339582 (+) True G370452
TU421024 lncRNA downstream 34628 14343347 ~ 14343596 (+) True G370453
XM_036976848.1 mRNA upstream 42997 14148432 ~ 14229308 (+) False LOC110523253
XM_036976847.1 mRNA upstream 42997 14172563 ~ 14229308 (+) False LOC110523253
XM_036976845.1 mRNA upstream 42997 14175105 ~ 14229308 (+) False LOC110523253
XM_036976846.1 mRNA upstream 42997 14175440 ~ 14229308 (+) False LOC110523253
XM_036976843.1 mRNA upstream 129839 14128559 ~ 14142466 (+) False LOC110523252
XM_021601787.2 mRNA downstream 36914 14345633 ~ 14347412 (+) True LOC110523258
XM_021601789.2 mRNA downstream 42734 14351453 ~ 14367540 (+) False LOC110523259
XM_021601790.2 mRNA downstream 42734 14351453 ~ 14367540 (+) True LOC110523259
XM_021601793.2 mRNA downstream 68240 14376959 ~ 14429468 (+) False LOC110523261
XM_021601791.2 mRNA downstream 73749 14382468 ~ 14429468 (+) False LOC110523261
TU420927 other upstream 13172 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 503009 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1163171 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 2392270 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2843595 11425642 ~ 11428710 (+) True G366973
TU420951 other downstream 12385 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 58953 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 495942 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 739459 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 815571 15124290 ~ 15128817 (+) True G371182

Expression Profile