RNA id: XM_021601689.2


Basic Information

Item Value
RNA id XM_021601689.2
length 5969
RNA type mRNA
GC content 0.48
exon number 25
gene id megf10
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11947001 ~ 12051563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACATTCGGGATAACTTTCTCACTGTCCGACGGCTGTTGGGATGTACAGTAAATGAGCCAAACCAAAGCATTTTCGCAATTCTAACAATTCAACCACGTTTGTATAATTGGACGCGTACTGTAGGTCTCGTTTCCTATTTCAGTGGAAAACGTTTTGTTTCACCATCCACCGGATAAACTTATTTTCGTCAACCTGCAGTTTTTGGATCATTCATCATTCACTAGTGAGGACCATTCAATTGTGAGGAGCGAAACATTTAAAGGATCCATGAGCCCGAATAGGACGAAAACCCTCGCATAGAATAGGTGTAGCTTCCACCCAAGATGGCCGCCTCCTCCTTCCTGTGGCACTACGCGACTATCCTGCTGGCGGTGATGTGCTGCTTCTTGCCccgctccacctcctccctcaatCTGGAGGACCCCAACGTCTGCAGCCACTGGGAGAGCTACTCAGTCACCGTCCAGGAGTCGTACGCCCACCCCTTTGATCAGATTTATTACACCAGCTGCTCCGACATCCTCAACTGGTTCAAGTGCACGCGGCACAGGGTGAGCTATCGGACGGCCTACCGCAGAGGAGAGAAGACTATGTACCGCCGCAAGTCTCAGTGTTGCCCCGGATTCTACGAGAGCAGGGAGATGTGTGTCCCCCACTGTGCCGAGAAGTGTGTTCATGGCCGTTGTGTAGCCCCCAGCACCTGCCAGTGTGAGCCCGGCTGGGGGGGCCCCGACTGCTCCAGTGCGTGTGACAGCAACCACTGGGGTCCCCACTGCAGTAACCGCTGCCAGTGTCAGAACAGTGCACTGTGTAACCCCATCACGGGCGCCTGTATCTGCCAGCCCGGGTACAGGGGCTGGCGCTGCGAAGCGGTCTGCGAGGCGGGCACCTATGGCAACGGGTGCCAACAGAAGTGCCTGTGCCAAAATGGAGCAGCGTGCCACCACGTGACCGGGGAGTGCAAGTGTTCACCCGGATACACCGGTGCCTTTTGTGAGGACCTGTGCCCACCAGGGAAGCATGGACAGCAGTGTGAGGAGAGATGCCCTTGCCAGAATGGAGGAGTGTGCCACCATGTCACTGGAGAGTGCTCCTGCCCCGCTGGATGGATGggtacAGTGTGTGGCCAGCCGTGTCCGGAGGGGCGCTTCGGGAGGAACTGTTCCCAGGAGTGTCAGTGTCACAACGGGGGGATGTGTGTATCCTCCAGCGGACAGTGTCTGTGCAGTCCAGGCTACACCGGAGAACGGTGCCAGGAAGAGTGTCCGGTGGGTACATTTGGCGTGTCCTGTCGCCAGACGTGTCGCTGTGAGAACGGAGCCAAGTGCTACCACATCAGTGGCGCGTGTCTGTGTGAACCGGGCTACACGGGGGAGATGTGCGAGGTGCGCCTCTGTCCCGAGGGACACTATGGCCTCAAGTGTGACAAGAGGTGTCCCTGCCACGCCGAGAACACACGCAGCTGCCACCCGATGTCTGGCGAGTGCTCGTGCCAGCCTGGCTGGTCGGGGACCTACTGTAATGAGACATGTACACCCGGCTTCTTCGGCGAGTCATGCCAGCAAGTGTGCCAATGCCAGAATGGTGCCGACTGCCACAGCGTGACCGGGGAGTGCATCTGCGCTCCTGGCTTCAAGGGGTCCGACTGTTCTACAGCCTGCCCATCAGGGACCCACGGGATCAACTGCTCTGCCACGTGTGGCTGTAAGAACGGGGCACAGTGCTCTTCAGTGGATGGAGCCTGCTCCTGTAAAGCAGGTTGGCACGGAGTGCACTGCTCCATTAACTGCCCCAGTGGTACATGGGGGCTGGGGTGTAACCTCACCTGTATGTGTGGTAACGGGGGCGCCTGCAACGCCCTCAACGGACAGTGCACCTGTGCCCCCGGCTGGAGGGGTGAGAGGTGTGACCTCCACTGCCAGGATGGCACCTATGGCATGGACTGTAGGGAGCGCTGTGACTGTAGCCATGCCGACGGGTGCCACCCCTCCACGGGGTACTGTCGCTGCCTGGCTGGATGGACAGgtatccactgtgacagtgtgtgtgccgAGGGCCGCTGGGGGCCAAACTGTTCCCTCCCTTGCAACTGTAAGAACGGGGCTTCCTGTTCTCCTGATGAGGGCACCTGTGAGTGTGCGCCTGGGTTTCGGGGAACCACCTGCCAGCGCATCTGTTCACCAGGCTACTATGGCCACCGCTGCAGCCAGGCCTGTCCCCAGTGTGTCCACAGCATTGGACCTTGCCACCATGTCTCTGGCCAGTGTGACTGCCTCCCAGGGTTCAAGGGAGCCCTCTGTAACGAAGTGTGTCCCAGTGGTAGGTTTGGGAAGAACTGTGTGTGGGGGTGCACCTGTACCAACAACGGAACCTGTAACCCCATCGACGGCTCGTGCCAGTGTTACCCCGGCTGGATTGGAAGCGACTGTTCACAACCTTGTCCCCCTGGTCAGTGGGGGCCCAACTGTATCCACACATGTAACTGTCACAACGGGGCCTACTGCAGTGCCTATGACGGGGAGTGCAAGTGTACCCCGGGCTGGACGGGCCTCTACTGTACACAacGCTGTCCATTGGGCTTCTATGGTAAGGACTGTTCCCAGACCTGCCAATGTAAGAACGGAGCCGACTGTGACCACATCTCTGGCCATTGTACCTGCCGGACCGGCTTCATGGGACGCCACTGTGAGCAAAAATGCCCCCCTGGTTCCTATGGTTACGGCTGTCGTCAGGTTTGCGACTGTCTGAACAACTCCACCTGTGACCACATGACGGGTACTTGCTACTGCAACCCCGGCTGGAAGGGGGTGAGGTGTGACCAAGCCGGGGTGGTGATCGTGGGAAACTCCAACAGCCTGACTAGCGCTGCAGTGCCTGTGGACTCCTACCAGATCGGCGTCATTGCGGGCATCATCATCCTGGTGTTGTTGGTGctgttccttctcctcctcttcattgTATACAGGAAGAAGCAGAAGGGCAAGGAGACCACTATGCTTGCTGTCACCTACACACCCACCATCCGCGTCGCCGCCGACTACGCCATCGCCGATGCAGCGCACCCACAAACGAGTCAGACACCCAGACATCCCAACAGACATCCCAACAGCAACTACTTCTCTAACCCCAGTTACCACACTCTGACCCAGTGCACTAGTCCCCCACATGTCAACAACCTACCCTACGGAAAGGCTAAGAACAACCAGTTGTTTGTGAACCTGAAGAACGTGGACCAGAGGAAGAGGCTTCCCATAGCGGACCACACTGGAACCCTGCCTGCCGACTGGAAACAGGGGGGCTGCTTTAACGAGCTGGGAGCTTACGGAGTGGACCGACGACACATGGGGAAATCCCTGAGAGACCTGGTGAAGGGAACACCCTATCACGCCAGCTCCTGCTCCCTCAACAGCTCAGAGAATCCCTACGCCACCATCAAGGACCCACCCCTCCTGATGCCCAAAGTAGAGTGCGGCTACGTTGAGATGAAGTCACCCGCACGGCGAGACTCGCCCTATGCTGAAATCAACAACACCAGTCCCACAAATAAGAACGTCTACGAAGTCGAACCCACTGTCAACGCCATCCACTCACCTGGGAACAGCAACGGTCACGGCCCCTTTGGCCAGGACCCGTACGACCTACCAAAAAACAGCCACATCCCCTGTCACTATGATCTCCTGCCCACGCGGGACAGCCCCCCGTCACCCCACAAGGAACTAGACAGCGAATGAGCTACCAGAGAATCCCGCCACTAGGAGTTGGACAAGCGAATGTGCTTCCAGAGACTCAACAAGGACCCCACCCCCTCTACCCATGGCTCAGCTAATGAATGCTCCTCATTTGCTGGCATACTGTATGCTCATTCGCTGCACCATTGTTTTCTTgcatttgtttttttattatcACTATAATCATTCTTAATCACGTTTTTTTTCGGAGAGAGGAACTCTTATGTTGCCTCAAGTGTCACATTCACAATTTTCTTTATCAATGTAGACATGACTGTTATTTGTGAAAAGTTTGGTATTTTGAGGTGTTTGAGTAATATTGATATAGGAAAATCTGTCAAAAGCTGTATATGAAGTGTTCAGTAAATCATTTCAATCACCGGGGACTCATCACCTGCCTTTTAAAATCTATAGTATACAAAACAAACCTCAATTTATTATTGTAACGATTAAAGTGAACTTTAACAGTATTAGGAatccgctaattaaccagttaccaGTATTTTAGCCAattttttcttattttattttccCCCTTTGTTTTTTGTTATTAGTACTGTACGATTGAGcattgttgtttgtttgttagaCGATGTAACTGTTATTGTTGTTGACAAATCTTAATCTTTTTTTAGTCTGACATCAATACTAAAGTAACCAAAGGTTTAAGTGCCATAGTAAGTCATAGTAAAGCTTTTCTTTTAAGTTCCTTTTGCTCTATTAGTGGTGGATTATGAGCAAATAGTTGACTTGTGGCAAGCATTCAATCGCACAGTTTCAGGTCTATTACTATAAGCAGTTAGAGTTTTGTGTCAGTTACTGTTGTGAGAACAAGTTTAAATGTATTGCCATAATACTTTCATGACACTTCATAAGAATTACATAAAGCCTGTTATAACCTCCTGGAAGGTCATACAACTGACTGCAGAACACCGTAACATTCCATGTCAGCATTATGTCAATTCAATTGTGAAAAAGAGCGGGGTTTTATTCCTGGTTATGAAGGCATGTTGAAGGAGGACCACTAAAATATATCCAGATTATTAAATATCTCCAATATTAGATAATTAGATAGACTATGAGTTCATTGGCAATTACCTGTGAAATTGTGTTTAGACTTTTAATCAAATTTAGAACAGGAAAACTATTAATATGATGTACTCTGTTGTTAAAGTATGTAATAGTAATTGAACTTTTATGCAGTGCAATTAAAAGGGCTCAgtatcatttaaaaaaagaaagaaataaaaaataatttgtagTAATAATGCATAAGCTGGACTTTTGCATCGCAATGAAATGAAAGACCTTATCAAAAAAACAATATAATGAGACAAATTCAAGATTCACATGAAATACTGTATAAGCCTACATTTCCAGAAAATACTGTATTTCCATAAATACTGGATTTGTTCAACATTAGATTTAGAACTCTTTGTGTATTCTGCATGTCTTTTCACGCATTATGAATGGCCTAAAAGACAGCCACAAGTCTTAAACTATTCTGAGCCAGATATGAAATGTATTTGTACAAAAATGATGTATATAGCTGTAATCACTTGAAAACGAGAAGTGATGTTTGGTGTTGATGTAAACAAATAAATCAACAACACACCATGCCTTCCTTTTTGTATGTTATTAATATATCACACCCTGTGCTCTGTTCTTCAAGGTCCAATCAGAATAGCATAAATATCAAACTGTAGATAAGACTATATTTCACTAAATTATTTTCATTACAAAGAATTCCATAATAATTAAATCCCTGTTCTCTTACAAATGACAAGTTTCACAAGGAAACAACATGACAGTTTGACAGTGGCTTGACATTGGTTTCTTGAAGGCTGACAAAACTCTAGTCACTTAAACAACATATTGTTTTTATACCATTAATTGTTTATAATGCGTTATAAATAACATGTCactaaaaaaacattacaattcaGGATTAGTGTTATTGAAAATGTAGGCTATTGATATTTTTTCAGACAAATTGGACCCGTGTAAATCTAAATGTATATACACATATTTTTGCTCGTTTGTTTTCAATCACCCTATTCTACTTAGACTTTTCTAAGAGTTTCACACTTATTTTTCCTCCCCAAAGAAATCTCATGACAAGGATTTAATTTTAATACCACTTGTTATACATGCTCAATATTGCATTTTGTCTCTTTTTTTGTTTTAggttacatgtactgtatttgCAAATGCTTTTCaataaaatgacaaaaatgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU418051 lncRNA upstream 16770 11924938 ~ 11930233 (+) True G367809
TU417907 lncRNA upstream 63790 11880329 ~ 11883213 (+) True G367682
TU417894 lncRNA upstream 128815 11817847 ~ 11818188 (+) True G367670
TU417887 lncRNA upstream 136661 11809282 ~ 11810342 (+) True G367663
TU417878 lncRNA upstream 152634 11791866 ~ 11794369 (+) True G367654
TU418114 lncRNA downstream 19850 12071413 ~ 12147440 (+) True G367867
TU418191 lncRNA downstream 125072 12176635 ~ 12176853 (+) True G367933
TU418192 lncRNA downstream 126271 12177834 ~ 12178295 (+) True G367934
TU418200 lncRNA downstream 136473 12188036 ~ 12188273 (+) True G367941
TU418203 lncRNA downstream 141098 12192661 ~ 12192892 (+) True G367944
XM_036979093.1 mRNA upstream 24077 11919738 ~ 11922926 (+) False LOC110523202
XM_036979094.1 mRNA upstream 24077 11919738 ~ 11922926 (+) False LOC110523202
XM_036979095.1 mRNA upstream 24077 11919738 ~ 11922926 (+) True LOC110523202
XM_036979096.1 mRNA upstream 25526 11919738 ~ 11921477 (+) False LOC110523202
XM_021601681.2 mRNA upstream 92171 11832976 ~ 11854832 (+) True lmnb1
XM_021601692.2 mRNA downstream 5389 12056952 ~ 12093392 (+) False prrc1
XM_036976790.1 mRNA downstream 5389 12056952 ~ 12093392 (+) False prrc1
XM_036976789.1 mRNA downstream 6581 12058144 ~ 12093392 (+) True prrc1
XM_021601693.2 mRNA downstream 62140 12113703 ~ 12134568 (+) True LOC110523206
XM_036976792.1 mRNA downstream 129205 12180768 ~ 12261242 (+) False slc12a2
TU417909 other upstream 66968 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 518293 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 969851 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 2097849 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2717772 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 1057133 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 1713684 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2204240 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2269541 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 2316109 14367672 ~ 14368161 (+) True G370414

Expression Profile