LOC110523421 (LOC106568255)


Basic Information

Item Value
gene id LOC110523421
gene name LOC106568255
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21816778 ~ 21822877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977050.1
TTGTTGAGGTTGAGAACTTAAAAGCAAGTGACCACACCAGCACCTGTTACTTTGTGATTGCTGCCCCACCCACTCTTTGACTGGAAAGAGAGCAAGTGTGTGAATTTGTTTGTGCCCTTTCTTTGGTTCTTTTCTCCCAAATCCTGGGGGACGATCATCGTTGCAACATGGTTTGGCTTCTGATTCTCTGGGTTGTCCAAGTGGACAACTCTAAAAACCCCATCAACAATTCTACTAATGTGACTTTCTCTGCCACAGGTTCTACTGCCTCGATGGGGCCATGTCGCAGACAAAATGATTGGTATAAAACACCTGAAACCAGAGAAGaGGACTTACAGTTTGACCTTGCTATCATGGAGGGAGACATTCTGGTTTCGGAAGACCGATTAGCTGTGAAGTCACTTTGGCCGGCGAATGAAGGCGTCACTTCTATCCCCTACAAGATCAACGATGATCTGGTGGACAGAAAGGAAACTATGCTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGAGTTAATCTCTGGGACAGGCTGTGCGTCGTATGTAGGTTTTCAGGGCGGGGCCCAGCCTCTGTACTTCGGTAGTGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACATCACCATACAGTGGGACAACGTGGTCTCCGGAAAAGAAGAGAACTTTAAGGTGAAGGAAGGAGACACTCAGGATCTGCCCTATGACTACGACTCCATAATGCACTACGGAACTTATTACTTCTCATCAAACCGGAACCCCACTATTGACTCCAAGAAGAGTGGAGTTCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAGCACGCCTTAACAAACTTTATCAATGTGAATAACAATGCACAGTTTAGCATTTATTACACCATCGAAGAAGATTCCAACACCACTGCTGCCGACTGATTCCAACACGCATGGCACTGACCTCCTAACTTCTCTTCACAACAATGAATAAGTTGGACAAGTCCCTTAAAGCTTTCTGATGTATTATACGTGTGGCTGGCTGCAGGCAGTGGTTTTATTTCTCCTGTGTACTCTCGCTGCCTTGAATTAGGCCTATACCACTGCACTTGTCTTggaaataaataaaatgacctaGACTGAAAAGAA
>XM_036977049.1
GGTTGAGAACTTAAAAGCAAGTGACCACACCAGCACCTGTTACTTTGTGATTGCTGCCCCACCCACTCTTTGACTGGAAAGAGAGCAAGTGTGTGAATTTGTTTGTGCCCTTTCTTTGGTTCTTTTCTCCCAAATCCTGGGGGACGATCATCGTTGCAACATGGTTTGGCTTCTGATTCTCTGGGTTGTCCAAGTGGGCAGTGTTCCCATAGCCAATTTCACAAATGCTACTACTTCAAATGCTACTTTCCCTGCCACAGTGGACAACTCTAAAAACCCCATCAACAATTCTACTAATGTGACTTTCTCTGCCACAGGTTCTACTGCCTCGATGGGGCCATGTCGCAGACAAAATGATTGGTATAAAACACCTGAAACCAGAGAAGaGGACTTACAGTTTGACCTTGCTATCATGGAGGGAGACATTCTGGTTTCGGAAGACCGATTAGCTGTGAAGTCACTTTGGCCGGCGAATGAAGGCGTCACTTCTATCCCCTACAAGATCAACGATGATCTGGTGGACAGAAAGGAAACTATGCTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGAGTTAATCTCTGGGACAGGCTGTGCGTCGTATGTAGGTTTTCAGGGCGGGGCCCAGCCTCTGTACTTCGGTAGTGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACATCACCATACAGTGGGACAACGTGGTCTCCGGAAAAGAAGAGAACTTTAAGGTGAAGGAAGGAGACACTCAGGATCTGCCCTATGACTACGACTCCATAATGCACTACGGAACTTATTACTTCTCATCAAACCGGAACCCCACTATTGACTCCAAGAAGAGTGGAGTTCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAGCACGCCTTAACAAACTTTATCAATGTGAATAACAATGCACAGTTTAGCATTTATTACACCATCGAAGAAGATTCCAACACCACTGCTGCCGACTGATTCCAACACGCATGGCACTGACCTCCTAACTTCTCTTCACAACAATGAATAAGTTGGACAAGTCCCTTAAAGCTTTCTGATGTATTATACGTGTGGCTGGCTGCAGGCAGTGGTTTTATTTCTCCTGTGTACTCTCGCTGCCTTGAATTAGGCCTATACCACTGCACTTGTCTTggaaataaataaaatgacctaGACTGAAAAGAA
>TU429270
TCCTAATCTCACAGCACCAGCTCTGTAACCATCAGTGTTCTTCAGTTTGAAACCAATACTATGTATTTCATAGACTAATTTCTAATTATGTGGAATATAACTGAATTCGTTAACTCCTGCGAATTTCCCCAGCAACCTTGTTCGCTAAATTCCCCTTACATGAATAGCACCACATTGTCATCTACAGTTGCCACCCGTAATGGGTATCATGGGATAACATGTAAGCTCTTGAACTTGAAGGCCACCCGCTATGGGTTTCCTTAGGTAAGATGCAATAGTCATGCCTTGAATCGTGTAGAGTTTTCCTCCTGCTAGAGGTTCAACTTAATGGTTTCCATCTCAACAACTTGTCTAGATTTCCACTTTCATTCCCCTATATCACAATCACACCCAGCAGTGTCCACCAGTCACGTCTGCCTCTTTTAACTTCCAGGAAAAGAAGAGAACTTTAAGGTGAAGGAAGGAGACACTCAGGATCTGCCCTATGACTACGACTCCATAATGCACTACGGAACTTATTACTTCTCATCAAACCGGAACCCCACTATTGACTCCAAGAAGAGTGGAGTTCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAGCACGCCTTAACAAACTTTATCAATGTGAATAACAATGCACAGTTTAGCATTTATTACACCATCGAAGAAGATTCCAACACCACTGCTGCCGACTGATTCCAACACGCATGGCACTGACCTCCTAACTTCTCTTCACAACAATGAATAAGTTGGACAAGTCCCTTAAAGCTTTCTGATGTATTATACGTGTGGCTGGCTGCAGGCAGTGGTTTTATTTCTCCTGTGTACTCTCGCTGCCTTGAATTAGGCCTATACCACTGCACTTGTCTTggaaat

Function

NR:

description
LOW QUALITY PROTEIN: zinc metalloproteinase nas-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977050.1 False 1227 mRNA 0.46 10 21816778 21822877
XM_036977049.1 False 1286 mRNA 0.47 11 21816785 21822877
TU429270 True 886 lncRNA 0.43 3 21821582 21822850

Neighbor

gene id symbol gene type direction distance location
LOC110523420 LOC106568307 coding upstream 7854 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 46878 21765705 ~ 21769900 (+)
LOC110522823 NA coding upstream 121156 21689168 ~ 21695622 (+)
LOC110523415 LOC106568324 coding upstream 132510 21669421 ~ 21684268 (+)
LOC110523414 cetn3 coding upstream 180799 21633532 ~ 21635979 (+)
LOC110523423 LOC106568289 coding downstream 19191 21842068 ~ 21847237 (+)
LOC110523424 LOC106567937 coding downstream 131206 21954083 ~ 21958510 (+)
LOC110522824 LOC106563065 coding downstream 138598 21961475 ~ 21990926 (+)
LOC100135946 LOC100135946 coding downstream 174779 21997656 ~ 22000508 (+)
LOC110523429 acty coding downstream 223094 22045971 ~ 22053104 (+)
G377630 NA non-coding upstream 24969 21791502 ~ 21791809 (+)
G377629 NA non-coding upstream 25350 21790878 ~ 21791428 (+)
G377628 NA non-coding upstream 25980 21790581 ~ 21790798 (+)
G377619 NA non-coding upstream 36162 21780388 ~ 21780616 (+)
G377650 NA non-coding downstream 11840 21834717 ~ 21835040 (+)
G377658 NA non-coding downstream 26622 21849499 ~ 21850193 (+)
G377656 NA non-coding downstream 31306 21854183 ~ 21854828 (+)
G378403 NA non-coding downstream 37717 21860594 ~ 21865869 (+)
G378406 NA non-coding downstream 43111 21865988 ~ 21866406 (+)
LOC110523400 LOC106568542 other upstream 657859 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 980219 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1058277 20508074 ~ 20759255 (+)
G377022 NA other upstream 1219915 20591480 ~ 20596863 (+)
G376320 NA other upstream 1832930 19983261 ~ 19983848 (+)
G378660 NA other downstream 349658 22172535 ~ 22231920 (+)
G378832 NA other downstream 680875 22503752 ~ 22506270 (+)
G378868 NA other downstream 779233 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1119415 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1801087 23623921 ~ 23678038 (+)

Expression


Co-expression Network