LOC110523429 (acty)


Basic Information

Item Value
gene id LOC110523429
gene name acty
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22045971 ~ 22053104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602110.2
AGTCTACTCTAGAGACAACCGCATACCTACTGGGTTGGGTTGTGATCAACGCAAGCAGCAGCGACCAGTGGTCTGAGAGCAGAGTGACAGGGCGTTATTTACATGATTAAAATATCAAATAGGCAAGATTGTATCAAAGGATTAATAGAATCATATCTTAAACAATTAGTTCGTCATGGAGTCCTATGACATTATAGCTAACCAGCCGGTTGTGATCGATAATGGTTCAGGTGTTGTCAAAGCTGGCTTTGCTGGAGACCAGATCCCCAAATACTGCTTCCCCAACTATGTGGGCCGTCCCAAGCACGTGCGCGTGATGGCAGGAGCCCTGGAGGGGGACCTCTTCATTGGACCCAAAGCAGAGgAGCACAGAGGGTTGCTGTCAGTAAGGTATCCTATGGAGCATGGTATAGTGAAGGATTGGAACGATATGGAGAGGATCTGGCAGTATGTCTACTCTAAGGAACAGCTGCAGACCTTCTCAGAGGAGCACCCTGTCCTGCTGACTGAAGCCCCTCTGAACCCCAGTAAGAACAGGGAGAAGGCAGCTGAGGTGTTCTTTGAGACCTTCAACGTTCCCGCCCTCTTTATCTCCATGCAGGCAGTCCTCAGTCTCTATGCGACAGGGCGTACCACGGGTGTGGTGTTGGATGCGGGCGACGGAGTGACCCATGCAGTGCCCATCTACGAGGGCTTTGCCATTCCCCACTCCATCATGAGGGTGGATATCGCTGGAAGGGACGTGTCCCGTTACCTCCGGCTGCTGCTACGCAAGGAGGGCTATGACTTCCATACCTCCGCAGAGTTTGAGGTGGTCCGCACCATTAAAGAGAGAGCCTGCTACCTGTCCCTGAACCCCCAGAAGGATGAGACTCTGGAGACCGAGAAGGCCCAGTACACCCTCCCCGACGGTAGCACGCTGGATATTGGTCCAGCCAGGTTCCGCGCCCCAGAGCTGCTGTTCAGGCCAGACTTGATCGGAGACGAGAGCGAGGGGATCCACGAGGTGCTGGCCTTCGCTATCCAGAAGTCTGACATGGATCTCCGACGCACACTCTTCTCCAACATCGTACTGTCTGGAGGATCCACACTGCtcaaagGCTTCGGGGACAGGTTACTAAGCGAAGTGAAGAAGCTCGCTCCCAAAGACGTGAAGATCAAGATTTCCGCCCCTCAGGAGAGGCTCTACTCCACGTGGATCGGTGGCTCCATCCTGGCGTCGTTGGACACCTTTAAGAAGATGTGGGTCAGTAAGAAGGAGTATGAGGAGGACAGAGCACGGGCCATCCACAGGAAGACCTTCTAACACCGCTGCCCTTAAACTGACCTCAACATGACCTATCTGCCCTGTGCTGCCCCAACCTGTCACGACACTACCCTCCAATGCTCCTGTATTTGCTCTGTTTCCCCACATTACTGATTTGCCCCAACATCTGGAACTATCCCACAGCCCCATGTCTGCCCCTCCCCTTAAGGCCTCCCCCATCCTCTGGCAAGGGGACTTTCCATATACACCCTCCCTCAATTCAGCATGCCTTCTGTTACCAGCCATGTGGGAGAGAGCGGGGTGGCCCTTCAGGCAAGCCTGTGggcctctcacctcctcccacaCCCAGGGCTGCGTGGGCATATATGTCAATACTGTGGACTGTTCTTTCTGTTCTTAAAGGGGCAATGCTATACTCAACCCTGAAGTATTTATATTACTCTCCTATCTACCCTGCCCTGTACGATACCTTGCAATCATCCAATGACAAAGAAGGTGAACGTTTTTCGATTCTGTAAGAATTCCATTCCAAACCGAAGAGATTGATTTAATTGTTTTgcgttctttaaaaaaatatcttGGTCGTCACAGTTACAAATCACCATGTTAATGTTAGCAGTTGAATTCACCATTGTtttcttacatttttttgtttCCATTTGTTGAATTAGATTGTGTtgagggtcagggttaggatAGTCTGCTATAGGAATAGGTCATGCTGTAGACGGGTAGAGAATACCACTGTGTTTTACATTGCCTCATCAAATATTCAAGCAATTAATTGGAAAACATTCAAAGAACTTCTCTTTCCACCAACCCTCCCACATGTGTTCTTCAACAACAACTAATGGACATGTTTAGACGACAGCGATGTTTAACCTATCCTTATGATGTGTAAAGTATCTCCATTCAATtagctgtgttttttttctctttgttTGAAAATGACATTAGTGGAAATGGTTTGATAACAAAGGACCGGTGAGATGTATCCTCCTCACTTGGTACCAGATCCAACGGGGGGGATTTCAACTTTAAATAACCATTAGATGACCATTGCTATTTCTAAATGACCGTTTAAGATATGACAGTTGAACTTTGGGACCAGCTGAATGGGACCCTTGAATGCCTTGTAAAGATTAAACAGGACAAAGTGCTGTCCATAAAGCATGTTAGTGTTCTGTACTGCACAGAGACTGATCTGAGAGCTGTATGCCTGGACAGGATCATCTCTGAGGAGGTCCAAGTCTCCACTAACCATTGATACAATACAGGTTCATATTTAATAATCACCTTTCTGGTTAACCTTCAGATTGATGAAGGcttatctgatcctagatctgtggttatgGGCAGCTACAACCTGGAGTGATCTCTGATCTCGGTGTTAGTCAAGGGTCAGGGACTAGCTGAATATTGGGTGAAAGGCCACAAACATTGTAATTTGATTTCTCTCCAAAGACTCCATATTTGGCTCCATTTAAAGGATGGTGGAAATCACCTGTTAAATGTTACCTGTAAGTTATTTTAAAACACCATAAGTGTATGGGTTAGAACAATTGAGAGAGAGCAATGTTTAGTTGCTATAGACTGTAGTAGGACCATTCACATAATAAGCATGTAGAAGCACAAGATGGTGGATTATTATCAGTTAGTTTTCTACCCTCTATTCCCCCTCATGTACAACTAGAAGTCTGGGTGTTATTATGGCTAAGCTGATTTCCCTACGTCTCAGTGGCAGTAAAGGGCTTGTGTCCAAAACTGTGTCCGCCTTACTCCTGTGCCCTGGCACCGGAAAGTCCACTTCAGATTCTGGGTGTTTTTTAAAAGGTTCTATACTTAAAAAGCCTTGTGTACAGTGGACCGCTTTTCAAAAcgtcaaaaaataaaataaatgtacaatACTGTTTATTCAAGTGTTGCTTTTACTTTTCATTTTGTAAATTCAGTATAATAAATAAGTTAATGACAG

Function

NR:

description
Beta-centractin

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K16575 ACTR1, ARP1; centractin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602110.2 True 3242 mRNA 0.46 11 22045971 22053104

Neighbor

gene id symbol gene type direction distance location
LOC100135946 LOC100135946 coding upstream 45463 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 55045 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 87461 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 198734 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 223094 21816778 ~ 21822877 (+)
LOC110523432 LOC106567996 coding downstream 137264 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 715561 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 821066 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 889101 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 1012550 23065654 ~ 23158020 (+)
G378573 NA non-coding upstream 5331 22040391 ~ 22040640 (+)
G378571 NA non-coding upstream 6405 22039349 ~ 22039566 (+)
G378570 NA non-coding upstream 6723 22038994 ~ 22039248 (+)
G378513 NA non-coding upstream 8117 22037383 ~ 22037854 (+)
G378512 kctd9 non-coding upstream 9021 22033840 ~ 22036950 (+)
G378579 NA non-coding downstream 6438 22059542 ~ 22060247 (+)
G378582 NA non-coding downstream 11863 22064967 ~ 22066212 (+)
G378583 NA non-coding downstream 13286 22066390 ~ 22067020 (+)
G378584 NA non-coding downstream 14801 22067905 ~ 22068991 (+)
G378585 NA non-coding downstream 16195 22069299 ~ 22069557 (+)
LOC110523400 LOC106568542 other upstream 887052 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1209412 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1287470 20508074 ~ 20759255 (+)
G377022 NA other upstream 1449108 20591480 ~ 20596863 (+)
G376320 NA other upstream 2062123 19983261 ~ 19983848 (+)
G378660 NA other downstream 119431 22172535 ~ 22231920 (+)
G378832 NA other downstream 450648 22503752 ~ 22506270 (+)
G378868 NA other downstream 549006 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1570860 23623921 ~ 23678038 (+)

Expression


Co-expression Network