RNA id: XM_021602110.2


Basic Information

Item Value
RNA id XM_021602110.2
length 3242
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110523429
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22045971 ~ 22053104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTACTCTAGAGACAACCGCATACCTACTGGGTTGGGTTGTGATCAACGCAAGCAGCAGCGACCAGTGGTCTGAGAGCAGAGTGACAGGGCGTTATTTACATGATTAAAATATCAAATAGGCAAGATTGTATCAAAGGATTAATAGAATCATATCTTAAACAATTAGTTCGTCATGGAGTCCTATGACATTATAGCTAACCAGCCGGTTGTGATCGATAATGGTTCAGGTGTTGTCAAAGCTGGCTTTGCTGGAGACCAGATCCCCAAATACTGCTTCCCCAACTATGTGGGCCGTCCCAAGCACGTGCGCGTGATGGCAGGAGCCCTGGAGGGGGACCTCTTCATTGGACCCAAAGCAGAGgAGCACAGAGGGTTGCTGTCAGTAAGGTATCCTATGGAGCATGGTATAGTGAAGGATTGGAACGATATGGAGAGGATCTGGCAGTATGTCTACTCTAAGGAACAGCTGCAGACCTTCTCAGAGGAGCACCCTGTCCTGCTGACTGAAGCCCCTCTGAACCCCAGTAAGAACAGGGAGAAGGCAGCTGAGGTGTTCTTTGAGACCTTCAACGTTCCCGCCCTCTTTATCTCCATGCAGGCAGTCCTCAGTCTCTATGCGACAGGGCGTACCACGGGTGTGGTGTTGGATGCGGGCGACGGAGTGACCCATGCAGTGCCCATCTACGAGGGCTTTGCCATTCCCCACTCCATCATGAGGGTGGATATCGCTGGAAGGGACGTGTCCCGTTACCTCCGGCTGCTGCTACGCAAGGAGGGCTATGACTTCCATACCTCCGCAGAGTTTGAGGTGGTCCGCACCATTAAAGAGAGAGCCTGCTACCTGTCCCTGAACCCCCAGAAGGATGAGACTCTGGAGACCGAGAAGGCCCAGTACACCCTCCCCGACGGTAGCACGCTGGATATTGGTCCAGCCAGGTTCCGCGCCCCAGAGCTGCTGTTCAGGCCAGACTTGATCGGAGACGAGAGCGAGGGGATCCACGAGGTGCTGGCCTTCGCTATCCAGAAGTCTGACATGGATCTCCGACGCACACTCTTCTCCAACATCGTACTGTCTGGAGGATCCACACTGCtcaaagGCTTCGGGGACAGGTTACTAAGCGAAGTGAAGAAGCTCGCTCCCAAAGACGTGAAGATCAAGATTTCCGCCCCTCAGGAGAGGCTCTACTCCACGTGGATCGGTGGCTCCATCCTGGCGTCGTTGGACACCTTTAAGAAGATGTGGGTCAGTAAGAAGGAGTATGAGGAGGACAGAGCACGGGCCATCCACAGGAAGACCTTCTAACACCGCTGCCCTTAAACTGACCTCAACATGACCTATCTGCCCTGTGCTGCCCCAACCTGTCACGACACTACCCTCCAATGCTCCTGTATTTGCTCTGTTTCCCCACATTACTGATTTGCCCCAACATCTGGAACTATCCCACAGCCCCATGTCTGCCCCTCCCCTTAAGGCCTCCCCCATCCTCTGGCAAGGGGACTTTCCATATACACCCTCCCTCAATTCAGCATGCCTTCTGTTACCAGCCATGTGGGAGAGAGCGGGGTGGCCCTTCAGGCAAGCCTGTGggcctctcacctcctcccacaCCCAGGGCTGCGTGGGCATATATGTCAATACTGTGGACTGTTCTTTCTGTTCTTAAAGGGGCAATGCTATACTCAACCCTGAAGTATTTATATTACTCTCCTATCTACCCTGCCCTGTACGATACCTTGCAATCATCCAATGACAAAGAAGGTGAACGTTTTTCGATTCTGTAAGAATTCCATTCCAAACCGAAGAGATTGATTTAATTGTTTTgcgttctttaaaaaaatatcttGGTCGTCACAGTTACAAATCACCATGTTAATGTTAGCAGTTGAATTCACCATTGTtttcttacatttttttgtttCCATTTGTTGAATTAGATTGTGTtgagggtcagggttaggatAGTCTGCTATAGGAATAGGTCATGCTGTAGACGGGTAGAGAATACCACTGTGTTTTACATTGCCTCATCAAATATTCAAGCAATTAATTGGAAAACATTCAAAGAACTTCTCTTTCCACCAACCCTCCCACATGTGTTCTTCAACAACAACTAATGGACATGTTTAGACGACAGCGATGTTTAACCTATCCTTATGATGTGTAAAGTATCTCCATTCAATtagctgtgttttttttctctttgttTGAAAATGACATTAGTGGAAATGGTTTGATAACAAAGGACCGGTGAGATGTATCCTCCTCACTTGGTACCAGATCCAACGGGGGGGATTTCAACTTTAAATAACCATTAGATGACCATTGCTATTTCTAAATGACCGTTTAAGATATGACAGTTGAACTTTGGGACCAGCTGAATGGGACCCTTGAATGCCTTGTAAAGATTAAACAGGACAAAGTGCTGTCCATAAAGCATGTTAGTGTTCTGTACTGCACAGAGACTGATCTGAGAGCTGTATGCCTGGACAGGATCATCTCTGAGGAGGTCCAAGTCTCCACTAACCATTGATACAATACAGGTTCATATTTAATAATCACCTTTCTGGTTAACCTTCAGATTGATGAAGGcttatctgatcctagatctgtggttatgGGCAGCTACAACCTGGAGTGATCTCTGATCTCGGTGTTAGTCAAGGGTCAGGGACTAGCTGAATATTGGGTGAAAGGCCACAAACATTGTAATTTGATTTCTCTCCAAAGACTCCATATTTGGCTCCATTTAAAGGATGGTGGAAATCACCTGTTAAATGTTACCTGTAAGTTATTTTAAAACACCATAAGTGTATGGGTTAGAACAATTGAGAGAGAGCAATGTTTAGTTGCTATAGACTGTAGTAGGACCATTCACATAATAAGCATGTAGAAGCACAAGATGGTGGATTATTATCAGTTAGTTTTCTACCCTCTATTCCCCCTCATGTACAACTAGAAGTCTGGGTGTTATTATGGCTAAGCTGATTTCCCTACGTCTCAGTGGCAGTAAAGGGCTTGTGTCCAAAACTGTGTCCGCCTTACTCCTGTGCCCTGGCACCGGAAAGTCCACTTCAGATTCTGGGTGTTTTTTAAAAGGTTCTATACTTAAAAAGCCTTGTGTACAGTGGACCGCTTTTCAAAAcgtcaaaaaataaaataaatgtacaatACTGTTTATTCAAGTGTTGCTTTTACTTTTCATTTTGTAAATTCAGTATAATAAATAAGTTAATGACAG

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K16575 ACTR1, ARP1; centractin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430322 lncRNA upstream 5331 22040391 ~ 22040640 (+) True G378573
TU430320 lncRNA upstream 6405 22039349 ~ 22039566 (+) True G378571
TU430319 lncRNA upstream 6723 22038994 ~ 22039248 (+) True G378570
TU430251 lncRNA upstream 8117 22037383 ~ 22037854 (+) True G378513
TU430245 lncRNA upstream 9021 22033840 ~ 22036950 (+) False G378512
TU430329 lncRNA downstream 6438 22059542 ~ 22060247 (+) True G378579
TU430332 lncRNA downstream 11863 22064967 ~ 22066212 (+) True G378582
TU430333 lncRNA downstream 13286 22066390 ~ 22067020 (+) True G378583
TU430335 lncRNA downstream 14801 22067905 ~ 22068991 (+) True G378584
TU430338 lncRNA downstream 16195 22069299 ~ 22069557 (+) True G378585
NM_001124290.1 mRNA upstream 45463 21997656 ~ 22000508 (+) True LOC100135946
LOC110522824 mRNA upstream 55045 21961475 ~ 21990926 (+) True LOC110522824
XM_021602100.2 mRNA upstream 87461 21954083 ~ 21958510 (+) True LOC110523424
XM_021602099.2 mRNA upstream 198734 21842068 ~ 21847237 (+) True LOC110523423
XM_036977050.1 mRNA upstream 223094 21816778 ~ 21822877 (+) False LOC110523421
XM_036977053.1 mRNA downstream 137264 22190368 ~ 22221369 (+) False LOC110523432
XM_021602112.2 mRNA downstream 137265 22190369 ~ 22221369 (+) False LOC110523432
XM_036977054.1 mRNA downstream 137265 22190369 ~ 22221369 (+) True LOC110523432
XM_036977064.1 mRNA downstream 715561 22768665 ~ 22799421 (+) True LOC110523445
XM_021602137.2 mRNA downstream 821066 22874170 ~ 22903435 (+) True dmgdh
TU428818 other upstream 887052 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1209412 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1287470 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1449108 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 2062123 19983261 ~ 19983848 (+) True G376320
TU430417 other downstream 119431 22172535 ~ 22231920 (+) False G378660
TU430418 other downstream 119431 22172535 ~ 22231920 (+) True G378660
TU430626 other downstream 450648 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 549006 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 889188 22942292 ~ 23007287 (+) True lhfpl2a

Expression Profile