RNA id: XM_021602112.2


Basic Information

Item Value
RNA id XM_021602112.2
length 3457
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110523432
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22190368 ~ 22221369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacccccaGTCTTCCCTCCCCACTTTCTGcctccagtctcccgtcttccctcCTCACTTTCTTCCTCCAGTCTCCCTTCTCCCGTtttccctcctcccccaccccagTCTCCCGGCGGCGGCCTAGCTCTTCCTTCCACTCCACCTCAGAAACACCAAGCGACTTGTATTATTTCCCATGCGACCATATACACGCACACAACCAGCGACTAACTTTTCTCAAACTCGCAAGGGTTGAATTTTCTATTTTTGAAGGATAATGGACGACAAAATAATTAAGAAAGTAGGCTTGTGAGCTGACTTTTCTTCGGGCTGATTTTACTCGGGAGGCTAACGTTAAGTAGGAGGAGAACGTATGTGCAGGAGGACAACTTATGTGCGTGCGTGTTTTAAACTTCTGCGACGTACAGCTTTCCATTGTTTTCGTTTTCCCTTTCAGTTTTAAGAGATTGCTAGTTGTTTTTACATCAGTATACGGTTATTCGTGGGGTCGTCGATGTGggttgtaacgttagctagtttttCTAGCCCAAAATAAAAGACGCGACAAGAAACGAGTGGAACAACTCCAGGAATCGACTAGCTAGTTAACTAGTTAGCTTAGCatggctaactaacgttagctagctaacaatgaacAGTCGTTGGATGCTTATTTTTGCAAAGTTTGCAACAACTCGTCTTGTTCATGGCTAATCTCGTTACTACCACTGGAAATCGTGGAAATCCAAATAATACAgtgtactagctagctaacgttagcagggtGTTTTGAAACTCGGTGGGTACGACATCACTTCCACGGCAAGACAACAGTGAGTGTGTTTTTAGAAATTCAAGATGCCGCAGCtggacggaggaggaggagatgatttGGGAGCCAACGATGAGTTGATCTCGTTTAAAGACGAGGGGGAGCAGGAGGAAAAGACCGCCGAGAATGTGTCCTCTGAGCGGGACCTGGACGATGTCAAGTCTTCACTGGTCAACGAGACGGAGAACAACAGCAGTTCGTCTGACTCCGAGcagGCAGTCAGTCATAGACGTCCCCAGCATCACATACCGGATTGGGAGAGTTATGTCAGACAGAGAGAGTTCGTTGCAGAAGctctgaGGAGACAGCAACACGACAGTGGGTTGTTCAAGGCATCTCTGTACGCTGGCTATCCCTTACTGATGATCCCTGACCTGGGTAACCTAGCCAACCTGGGCCACTTGGGGAACCTTGGTAACCCCTACCTTTCTCCTGGAGTCCTCTCACCCGGCTCCAGGACGTATCTACAGATGAAGTGGCCCATGCTGGATGTTCCTGGAACTTCTGCTTTAAAAgaccctcgctctccctcccctgctcacatgtccaATAAGGTCCCAGTGGTGCAGCATAGTCACCTGTCCCCCTTTTCCCCACTCCTGTCCTACAGTCCAGACCCCTTCCCTCCACGGAcaccccctcctcacctctcagCTGACACGGGtcttccccccaccccccacccagcAGAGCTCTCTCcttactaccctctctctcctggaggcATGGAACACATGACACACCCGCTGAGCTGGCTGCAGGGCCAGTCCATGTACGGTATTCCAGTGGGGGGGTTTAGACCATCCTACCCTGCAGCTCTCGCCTTGAACTCTTCCATGTCCAGCTTTGTGTCCAGTCGTTTCTCACCCCACATGGTCCCGCCTCCCCAGACGTCAGTCCCCCACCCTGCTATCGTTTCCACGGCGATCAAACAAGAACCGAGAGACAGCAACCAGCACggGAGGTGTGCTGTGTCtatgggggacagagaggaggagaagaagcctCACGTGAAGAAGCCTCTAAATGCCTTTATGCTGTACATGAAGGAGCAGAGACCCAAGGTGGTGGCTGAGTGCACCCTGAAGGAGAGCGCTGCCATCAACCAGATTCTGGGACGCAGATGGCACACTCTGTCTCGTGAGGAGCAGTCTAAGTACTATGATATGGCCCGCAAGGAGAGACAGCTACACTCCCAACTCTACCCTGGATGGTCAGCTAGAGACAACTACGGGAAGAGGAAGAAAAGGAAGAGAGATGGCAGGCCAGAGACTGCTCCAGAGGGACAGATGACACACCGCCAGTCAGCTGCTCCAGAGGAGCACTTCTCCGCGCAGCTCAAGAAGTCGTGTGTGTCGTATGGAACTCAGGAGAGACCCAGTGTGtctcacacacacctgacacacacacacctgtcccaggCTAGTCCCGCCTCCTCTCTGGACTCTCCAGCCACGCCCACCACTGCTCTGGCCTCCCCTGCTGCTCCCGCACCTACACACaccgaacacacacactcacactccgaGCACACACATCCTGAGCAGGTCCAGCCCCTCTCCCTCACCACCAAACCCCCTCGTCTGCAGTCACTCAGGGACACACACAGTCAGGCTTACACCCACATCCAgtctcacacacattcacatgtattaactcacacacacctccctctgccccctacccccaatacctcttcatcccCCTACTCTCATCCCCCATTTTCTCTCCACATGAGCTCATCCAGCAAACAGACTCCACCACTTCTGTCTCGACCAATCCCCTTTGCCTCTGGCTTAGCTCCTCCCACCTCTATCCACCAATCAACAATGAGCTCCCATCATGCCATGCTCCAGTCCCAGCCACTCTCCCTCGTCACTAGAAATAATAGTTAAAACCCAAAGACGCTAACCACAGATCTATGATCAGATTCCTCTAAGGCCAGCCGTAATCGTAAGCATTACACTACCCCTAACCACAGATACCTCTAAACCCTGTCTAATCATGGGTGGGATGAAAAAATATATGACCCCCTATCAGTGTGTAGGAGAGTCCACTCTACTATGTGGGCAGGGGTGAACAACTCCTTGAGGGCTACATGATGCTCCAGCCTAGCAACACACACAATTGAAATAGTGTTTGAATAGAGGTTTAAATGAAGATCATTATTAATTGATTAGCAGAATCATGTTAGTGATTGGGGGGGGAAAGCCTGCAACACCCCCTGTTTGTTGCCTTAGGATTAGGGTCAATTTCTTCCTACTTTTTTAATTGCTTTTTTTTGTCTgtaaataaactttttttttaaaccttttatAGATATTAGACCGGGTTTTATATTAGTATGGAAAGGAAACAATTATTGGTCAATATTTGACCACACCTCTTAACTTGTCTTCATGTAACTACATTTTTTTGTCAAATGGTATTGCAACGTCTTACCTTTTTTTGTATTCATTTGTCCAATTTGCTACTTGTATAAAATACAAAAAAGGAAAGGTACATTTTTAAAGAAAAATAGATCAAAGTACGTTTCAGTCTTTGTGGTAGTAATGTGTTTTctgttttccctccctcccctattcTTTTATAACCCCCCGTATGACTTGAGTCTTGATAATAAACATCTACTTATTTCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430355 lncRNA upstream 9540 22179681 ~ 22180829 (+) True G378601
TU430410 lncRNA upstream 30181 22159909 ~ 22160188 (+) True G378653
TU430387 lncRNA upstream 38899 22128817 ~ 22151470 (+) True G378630
TU430371 lncRNA upstream 84016 22100494 ~ 22106353 (+) True G378615
TU430343 lncRNA upstream 85787 22072417 ~ 22104582 (+) True G378590
TU430443 lncRNA downstream 16082 22237451 ~ 22237915 (+) True G378678
TU430447 lncRNA downstream 19920 22241289 ~ 22241544 (+) True G378682
TU430448 lncRNA downstream 20265 22241634 ~ 22241965 (+) True G378683
TU430449 lncRNA downstream 20739 22242108 ~ 22242323 (+) True G378684
TU430450 lncRNA downstream 22268 22243637 ~ 22243875 (+) True G378685
XM_021602110.2 mRNA upstream 137265 22045971 ~ 22053104 (+) True LOC110523429
NM_001124290.1 mRNA upstream 189861 21997656 ~ 22000508 (+) True LOC100135946
LOC110522824 mRNA upstream 199443 21961475 ~ 21990926 (+) True LOC110522824
XM_021602100.2 mRNA upstream 231859 21954083 ~ 21958510 (+) True LOC110523424
XM_021602099.2 mRNA upstream 343132 21842068 ~ 21847237 (+) True LOC110523423
XM_036977064.1 mRNA downstream 547296 22768665 ~ 22799421 (+) True LOC110523445
XM_021602137.2 mRNA downstream 652801 22874170 ~ 22903435 (+) True dmgdh
XM_036977065.1 mRNA downstream 720836 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977066.1 mRNA downstream 720836 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977067.1 mRNA downstream 720836 22942205 ~ 23007315 (+) False lhfpl2a
TU428818 other upstream 1031450 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1353810 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1431868 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1593506 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 2206521 19983261 ~ 19983848 (+) True G376320
TU430626 other downstream 282383 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 380741 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 720923 22942292 ~ 23007287 (+) True lhfpl2a
TU432291 other downstream 1402595 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 1412652 23634021 ~ 23637091 (+) True LOC110522832

Expression Profile