RNA id: TU430418


Basic Information

Item Value
RNA id TU430418
length 1818
RNA type TUCP
GC content 0.44
exon number 4
gene id G378660
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22172535 ~ 22231920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccacttcttgccagatttgtgcaatatacgactgattgttgtcctatggacagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctctgtgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggttcatctacaatgattgaagttgatttaactagggacatcaataagggatcatagctttcacctggattcacctgatcagtctatgtcatggaaagagcaggtgtccttaatgttttgtacactcagtgtaggttTTCAATTGTTTTGTATTCAGGGCTGCAGTGGACTCTGTGACCGTCCCCTAATTGCTAACATTACGTAATAACGCTGATATGTTTGATAAAATGGATAAAACCAGGATATAAAGTATTTGTTACTGTtttagagctgatgtagagcaggggtgtgtgtgtataaggtatgtgcgtgtctgtgtgtgttacctgtcttgAAGAGTGTGTACATCTCATGAGAGGTGAGGTCAGTGTGTATGTCCACTCTGTATCCTAGTCTGGTCAGGGTACGGTGGAGTCTTTTGGCGTCTTTCTCTGCCCCTGGTCTCCTGCACAGTGGTACACCGTGGTCAAAGTTCGACACTGCGACCAGGACAGCGCGGTTACACTCCTCATCGCCAGCCTTTGTCCGTCTCCACAGTGGCATTTCCAAAAATATAGAGACCATTGGTCCAGTTGGTCGCTgcagtctggttcctctcaaggtttctacCAATCCCTTTGGAGTCTCAACCTATCCCTTGCTTCTGTCGTCTCTGCTTGCTCTCTGGGGGTTTAGGTCGGATTCAATGTCTCTGACAAATGTACTAGTATATTGTGCACAAAGTCCAATGTGATAGAAAGAGTGTAGATCAGAGTGCCGAATTGAGTGACTTCTCTCTTGGGGTAAGGTTCAACAGGTAAGAGCCACCTGAAtacaccaccagcaggtaaataTCCACCTGAATACACCACCAGCACGTATACATCCACCTAAGCTGTGTCTCAGCTTCTTTAGAATGTCAGTGTAAAGTCTGTGTGTTTATGAGTCAGGTTCAGGTGTGTATGTATTTATACTGCAGCTGAACACTGTTCCAACTTGCAGACAGATGGGCTACCGCCAATAGCCCTGCCCTTTACACTAACACACCTGGAAGGCCAGAAGTGGAATATCAGGATCACATCCTGTTGCGTCACAGTATTACCTAACTCTGCTCTTTCTGTTTTTCCCTCATTTCCTCCTACATTCATCTACTATGTTCTTTCTGTCTGCTGGGAAAGCCATCTCAGTGAAACCCGTGTAAGCTCATCTCTGGACTTAACCATATTTCACAACCTATACTATAGCAATGGATAACCACCTCATCTCATTTGTAAAGGGCTTGCTGGGCAGACTGTCATCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU430410 lncRNA upstream 12347 22159909 ~ 22160188 (+) True G378653
TU430387 lncRNA upstream 21065 22128817 ~ 22151470 (+) True G378630
TU430371 lncRNA upstream 66182 22100494 ~ 22106353 (+) True G378615
TU430343 lncRNA upstream 67953 22072417 ~ 22104582 (+) True G378590
TU430341 lncRNA upstream 101006 22071299 ~ 22071529 (+) True G378588
TU430443 lncRNA downstream 5531 22237451 ~ 22237915 (+) True G378678
TU430447 lncRNA downstream 9369 22241289 ~ 22241544 (+) True G378682
TU430448 lncRNA downstream 9714 22241634 ~ 22241965 (+) True G378683
TU430449 lncRNA downstream 10188 22242108 ~ 22242323 (+) True G378684
TU430450 lncRNA downstream 11717 22243637 ~ 22243875 (+) True G378685
XM_021602110.2 mRNA upstream 119431 22045971 ~ 22053104 (+) True LOC110523429
NM_001124290.1 mRNA upstream 172027 21997656 ~ 22000508 (+) True LOC100135946
LOC110522824 mRNA upstream 181609 21961475 ~ 21990926 (+) True LOC110522824
XM_021602100.2 mRNA upstream 214025 21954083 ~ 21958510 (+) True LOC110523424
XM_021602099.2 mRNA upstream 325298 21842068 ~ 21847237 (+) True LOC110523423
XM_036977064.1 mRNA downstream 536745 22768665 ~ 22799421 (+) True LOC110523445
XM_021602137.2 mRNA downstream 642250 22874170 ~ 22903435 (+) True dmgdh
XM_036977065.1 mRNA downstream 710285 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977066.1 mRNA downstream 710285 22942205 ~ 23007315 (+) False lhfpl2a
XM_036977067.1 mRNA downstream 710285 22942205 ~ 23007315 (+) False lhfpl2a
TU428818 other upstream 1013616 21108169 ~ 21158919 (+) False LOC110523400
TU428679 other upstream 1335976 20831258 ~ 20836559 (+) True LOC110522817
TU428462 other upstream 1414034 20743584 ~ 20758501 (+) True LOC110522816
TU428545 other upstream 1575672 20591480 ~ 20596863 (+) True G377022
TU427802 other upstream 2188687 19983261 ~ 19983848 (+) True G376320
TU430626 other downstream 271832 22503752 ~ 22506270 (+) True G378832
TU430672 other downstream 370190 22602110 ~ 22629669 (+) True G378868
TU430848 other downstream 710372 22942292 ~ 23007287 (+) True lhfpl2a
TU432291 other downstream 1392044 23623964 ~ 23637091 (+) False LOC110522832
TU432292 other downstream 1402101 23634021 ~ 23637091 (+) True LOC110522832