Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118964584 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 32653382 ~ 32654170 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006810 | transport | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005215 | transporter activity | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005051721.1 | False | 290 | mRNA | 0.44 | 3 | 32653382 | 32654170 |
| TU443594 | True | 350 | lncRNA | 0.42 | 2 | 32653702 | 32654170 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523621 | LOC100194632 | coding | upstream | 30186 | 32607119 ~ 32623203 (+) |
| prrc2b | NA | coding | upstream | 56105 | 32556081 ~ 32597277 (+) |
| LOC110523616 | LOC106565683 | coding | upstream | 121782 | 32524581 ~ 32531600 (+) |
| nup214 | LOC106565702 | coding | upstream | 168277 | 32404498 ~ 32485105 (+) |
| LOC110523614 | LOC106565718 | coding | upstream | 263160 | 32340876 ~ 32390222 (+) |
| LOC110523625 | ddrgk1 | coding | downstream | 30138 | 32684308 ~ 32694378 (+) |
| LOC110523626 | LOC106565624 | coding | downstream | 40577 | 32694747 ~ 32701711 (+) |
| LOC110523622 | lzts3 | coding | downstream | 50455 | 32704625 ~ 32717006 (+) |
| LOC110523627 | LOC106565641 | coding | downstream | 80735 | 32734905 ~ 32736553 (+) |
| LOC110523629 | LOC107720969 | coding | downstream | 108011 | 32762181 ~ 32884099 (+) |
| G390700 | NA | non-coding | upstream | 116455 | 32536413 ~ 32536927 (+) |
| G390649 | NA | non-coding | upstream | 250269 | 32402826 ~ 32403113 (+) |
| LOC110523612 | LOC106565885 | non-coding | upstream | 316868 | 32333502 ~ 32336514 (+) |
| G390610 | NA | non-coding | upstream | 335013 | 32318155 ~ 32318369 (+) |
| G390929 | NA | non-coding | downstream | 249742 | 32903912 ~ 32904859 (+) |
| G390943 | NA | non-coding | downstream | 304671 | 32958841 ~ 32959712 (+) |
| G390393 | NA | other | upstream | 432849 | 32220181 ~ 32220533 (+) |
| G390184 | NA | other | upstream | 692637 | 31960355 ~ 31960745 (+) |
| G388019 | NA | other | upstream | 2365558 | 30286951 ~ 30287824 (+) |
| G387516 | NA | other | upstream | 2755248 | 29896986 ~ 29898134 (+) |
| tbx5a | LOC106566939 | other | upstream | 2907188 | 29741800 ~ 29763439 (+) |
| G391513 | LOC100136561 | other | downstream | 504656 | 33158826 ~ 33162980 (+) |
| G391805 | NA | other | downstream | 706787 | 33360957 ~ 33361341 (+) |
| G392776 | NA | other | downstream | 1493304 | 34147474 ~ 34150795 (+) |
| G394882 | NA | other | downstream | 3250942 | 35905112 ~ 35905781 (+) |
| G394910 | NA | other | downstream | 3312767 | 35966937 ~ 36004829 (+) |
