LOC110523627 (LOC106565641)


Basic Information

Item Value
gene id LOC110523627
gene name LOC106565641
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32734905 ~ 32736553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602496.2
CTTTATCAGCGTTGTACCAACTTGGACGATCCCAATAAATAACGGAAAGTTCTTAGTCGTTCAAAAAAAACGAGCCATTTGAAGGAGTTCAGTTGTAGCCGTAGCCTACAGTACAAATTGGACGAAGCACTTCAGACGGAACGAGATGCCAGATTCTACTATTCCACTTCTGTGCGTCCTGGGGCTCCTCGCGCTCTCCTCTGCATGCTACATCCAGAACTGTCCGCGAGGCGGGAAGCGCTCTTTTCCTGATCTGCAAAGACCGTGCATGTCATGTGGCCCTGGAAACCGGGGCCTCTGCTTTGGCCCCAGTATCTGCTGTGGGGAAGGGATGGGCTGCTATGTGGGCTCCCCAGAGGCAGCTAGTTGTGTGGAGGAGAACTACCTACCCTCTCCCTGTGAGGCCGGAGGAAGAGTGTGTGGGTCTGAGGAGGGACACTGTGCTGCACCTGGGGTGTGCTGTGATGCTGAGAGTTGTCTACTGGACCCAGACTGCCTAGACGACAGTAAACGTCAGCCACCCAGCGAGCAGAACAGTTCCTTGATGGAAGGTTTGGCAGGAGATCTGCTGCAGTGGATGCTGCATGCCACCAGAAGGGAGAGACCTCAGTAACAAACCACTGGCCAGCCCTCACCAAAACACACACCCAGAATAGCGCCTAGATCAGTTTCACATGCACTACTACTGCAAAAAACTTacacacatcatacacatacaacaggacacaggaaaggaagagtgGGTTTGCTACATAAGAAAAGCAATCAGCTCTAGTACATTAATATTTACTGTGCTTACAGTAGCCTTCAGTAAGTTAATTTCTAAGGCTTCAACTCAAATATGCATTGTACAATCCACTAGGGGTGGAAGGAATGTAAATATGTAGCAAATAAATATTTACTTGCACTATT
>TU443639
TTTGAAGGAGTTCAGTTGTAGCCGTAGCCTACAGTACAAATTGGACGAAGCACTTCAGACGGAACGAGATGCCAGATTCTACTATTCCACTTCTGTGCGTCCTGGGGCTCCTCGCGCTCTCCTCTGCATGCTACATCCAGAACTGTCCGCGAGGCGGGAAGCGCTCTTTTCCTGATCTGCAAAGACCGAGAGTTGTCTACTGGACCCAGACTGCCTAGACGACAGTAAACGTCAGCCACCCAGCGAGCAGAACAGTTCCTTGATGGAAGGTTTGGCAGGAGATCTGCTGCAGTGGATGCTGCATGCCACCAGAAGGGAGAGACCTCAGTAACAAACCACTGGCCAGCCCTCACCAAAACACACACCCAGAATAGCGCCTAGATCAGTTTCACATGCACTACTACTGCAAAAAACTTacacac

Function

NR:

description
PREDICTED: vasotocin-neurophysin VT 1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005185 neurohypophyseal hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602496.2 False 912 mRNA 0.49 3 32734905 32736553
TU443639 True 422 lncRNA 0.52 2 32734982 32736345

Neighbor

gene id symbol gene type direction distance location
LOC110523622 lzts3 coding upstream 17899 32704625 ~ 32717006 (+)
LOC110523626 LOC106565624 coding upstream 33194 32694747 ~ 32701711 (+)
LOC110523625 ddrgk1 coding upstream 40527 32684308 ~ 32694378 (+)
LOC118964584 NA coding upstream 80735 32653382 ~ 32654170 (+)
LOC110523621 LOC100194632 coding upstream 111709 32607119 ~ 32623203 (+)
LOC110523629 LOC107720969 coding downstream 25628 32762181 ~ 32884099 (+)
LOC110522915 NA coding downstream 149103 32885656 ~ 32896810 (+)
LOC110523631 LOC106565876 coding downstream 164310 32900863 ~ 32903763 (+)
LOC110523632 LOC106565566 coding downstream 173413 32909966 ~ 32963969 (+)
tsc1b LOC106565454 coding downstream 489817 33226370 ~ 33259075 (+)
G390700 NA non-coding upstream 197978 32536413 ~ 32536927 (+)
G390649 NA non-coding upstream 331792 32402826 ~ 32403113 (+)
G390929 NA non-coding downstream 167359 32903912 ~ 32904859 (+)
G390943 NA non-coding downstream 222288 32958841 ~ 32959712 (+)
G391401 LOC106565553 non-coding downstream 243609 32980162 ~ 32981015 (+)
G390393 NA other upstream 514372 32220181 ~ 32220533 (+)
G390184 NA other upstream 774160 31960355 ~ 31960745 (+)
G388019 NA other upstream 2447081 30286951 ~ 30287824 (+)
G387516 NA other upstream 2836771 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2988711 29741800 ~ 29763439 (+)
G391513 LOC100136561 other downstream 422273 33158826 ~ 33162980 (+)
G391805 NA other downstream 624404 33360957 ~ 33361341 (+)
G392776 NA other downstream 1410921 34147474 ~ 34150795 (+)
G394882 NA other downstream 3168559 35905112 ~ 35905781 (+)
G394910 NA other downstream 3230384 35966937 ~ 36004829 (+)

Expression


Co-expression Network