G390649


Basic Information

Item Value
gene id G390649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32402826 ~ 32403113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU443466
TGGCGGACTACAACCCCAAAAGGTGTATTGCCGCCACCAACAttaccaaaacaaacaaaactccCACTTCTTCCTTCTTTTAATTCTCCATATCTCCCTTCTCAGGCTCTAGGACCCGAGAGGGTGGTATGGCTTGTTCCAATATTCCACGTAACTCCTATGCTGAGAAATCTTTCAGCCCCAGGAACCGCTCCGCCGCATCCACTATGGTTTCTATCTTCCtggaccttctctccaccttggcagagCCATTAATTCCCATAGCTATAAAAGGCAACAAAGTCCAAA

Function

NR:

description
BLOC-1-related complex subunit 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443466 True 288 lncRNA 0.47 1 32402826 32403113

Neighbor

gene id symbol gene type direction distance location
LOC110523614 LOC106565718 coding upstream 12604 32340876 ~ 32390222 (+)
LOC110523612 LOC106565885 coding upstream 66381 32333502 ~ 32336514 (+)
lhx3 lhx3 coding upstream 132044 32257928 ~ 32270782 (+)
LOC110523608 NA coding upstream 242409 32152908 ~ 32160417 (+)
LOC110522913 LOC106565915 coding upstream 1430483 30966139 ~ 30975087 (+)
nup214 LOC106565702 coding downstream 1385 32404498 ~ 32485105 (+)
LOC110523616 LOC106565683 coding downstream 121468 32524581 ~ 32531600 (+)
prrc2b NA coding downstream 152968 32556081 ~ 32597277 (+)
LOC110523621 LOC100194632 coding downstream 204006 32607119 ~ 32623203 (+)
LOC118964584 NA coding downstream 250269 32653382 ~ 32654170 (+)
G390610 NA non-coding upstream 84457 32318155 ~ 32318369 (+)
G390450 NA non-coding upstream 89464 32313137 ~ 32313362 (+)
G390446 NA non-coding upstream 97997 32304606 ~ 32304829 (+)
G390396 NA non-coding upstream 178729 32223748 ~ 32224097 (+)
G390700 NA non-coding downstream 133300 32536413 ~ 32536927 (+)
LOC110523622 lzts3 non-coding downstream 311377 32704625 ~ 32717006 (+)
LOC110523627 LOC106565641 non-coding downstream 331869 32734905 ~ 32736553 (+)
G390393 NA other upstream 182293 32220181 ~ 32220533 (+)
G390184 NA other upstream 442081 31960355 ~ 31960745 (+)
G388019 NA other upstream 2115002 30286951 ~ 30287824 (+)
G387516 NA other upstream 2504692 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2656632 29741800 ~ 29763439 (+)
G391513 LOC100136561 other downstream 755713 33158826 ~ 33162980 (+)
G391805 NA other downstream 957844 33360957 ~ 33361341 (+)
G392776 NA other downstream 1744361 34147474 ~ 34150795 (+)
G394882 NA other downstream 3501999 35905112 ~ 35905781 (+)
G394910 NA other downstream 3563824 35966937 ~ 36004829 (+)

Expression


Co-expression Network