RNA id: TU443466


Basic Information

Item Value
RNA id TU443466
length 288
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G390649
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32402826 ~ 32403113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCGGACTACAACCCCAAAAGGTGTATTGCCGCCACCAACAttaccaaaacaaacaaaactccCACTTCTTCCTTCTTTTAATTCTCCATATCTCCCTTCTCAGGCTCTAGGACCCGAGAGGGTGGTATGGCTTGTTCCAATATTCCACGTAACTCCTATGCTGAGAAATCTTTCAGCCCCAGGAACCGCTCCGCCGCATCCACTATGGTTTCTATCTTCCtggaccttctctccaccttggcagagCCATTAATTCCCATAGCTATAAAAGGCAACAAAGTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443435 lncRNA upstream 66312 32334608 ~ 32336514 (+) True LOC110523612
TU443434 lncRNA upstream 68528 32333535 ~ 32334298 (+) False LOC110523612
TU443407 lncRNA upstream 84457 32318155 ~ 32318369 (+) True G390610
TU443242 lncRNA upstream 89464 32313137 ~ 32313362 (+) True G390450
TU443238 lncRNA upstream 97997 32304606 ~ 32304829 (+) True G390446
TU443520 lncRNA downstream 133300 32536413 ~ 32536927 (+) True G390700
TU443554 lncRNA downstream 204042 32607155 ~ 32623203 (+) True LOC110523621
TU443594 lncRNA downstream 250589 32653702 ~ 32654170 (+) True LOC118964584
TU443617 lncRNA downstream 311377 32714490 ~ 32716961 (+) True LOC110523622
TU443639 lncRNA downstream 331869 32734982 ~ 32736345 (+) True LOC110523627
XM_036977284.1 mRNA upstream 12604 32340876 ~ 32390222 (+) False LOC110523614
XM_036977285.1 mRNA upstream 12604 32340876 ~ 32390222 (+) False LOC110523614
XM_036977287.1 mRNA upstream 12604 32340876 ~ 32390222 (+) False LOC110523614
XM_036977286.1 mRNA upstream 12604 32367638 ~ 32390222 (+) True LOC110523614
XM_036977283.1 mRNA upstream 66381 32333502 ~ 32336445 (+) False LOC110523612
XM_021602472.2 mRNA downstream 1385 32404498 ~ 32485105 (+) False nup214
XM_021602473.2 mRNA downstream 1385 32404498 ~ 32485105 (+) False nup214
XM_036977288.1 mRNA downstream 1385 32404498 ~ 32485105 (+) False nup214
XM_036977289.1 mRNA downstream 1385 32404498 ~ 32485105 (+) False nup214
XM_036977290.1 mRNA downstream 1385 32404498 ~ 32485105 (+) False nup214
TU443183 other upstream 182293 32220181 ~ 32220533 (+) True G390393
TU442960 other upstream 442081 31960355 ~ 31960745 (+) True G390184
TU440680 other upstream 2115002 30286951 ~ 30287824 (+) True G388019
TU440079 other upstream 2504692 29896986 ~ 29898134 (+) True G387516
TU439971 other upstream 2656632 29741800 ~ 29746194 (+) True tbx5a
TU444420 other downstream 755713 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 957844 33360957 ~ 33361341 (+) True G391805
TU445804 other downstream 1744361 34147474 ~ 34148701 (+) False G392776
TU448046 other downstream 3501999 35905112 ~ 35905781 (+) True G394882
TU448080 other downstream 3563824 35966937 ~ 36004829 (+) True G394910

Expression Profile