LOC118964629


Basic Information

Item Value
gene id LOC118964629
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59608382 ~ 59612038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051822.1
GTTCTACCTATGTGAAGTGTTTTGGGACAACTTGTCTTTACATAATATATGTCTTATGTCTACGGTATGTTTCATGTCCTGTTTTTCTCTAGTTCTGGTGTTATTGGGAGTATTGATGTCCAGTAGCAATAGAGAGTGCTCCAGCCATCCCAAACAAGAACAATGTTTTCCCTCTGAGTCACTCCAAACAATGAGCCTTGACTGAACAGCTGTGTCTGCATATTCCAACCAGCCTCCACATCTGCTGCTTTGCCTGCTTCTCTCTGACGCAAACAGCATGCAACCAAAGTCTGCACAGCCATTCCTCATGTTCACTTACTTCATCAAAACCGCCTTTCGTTATGGAGATCAGACTATTGTCTTCCATATCAGTCTCATCTGTATTGCATGGTGAACAGTAGGTCATCTTTTCCCCCGGTCAGTGCTGAGGTGGTGACggcttctctcccctctctttctcccttcaggGTTGGTCTGACTTGGGAGCAGCCAGAGGACAGCCAGAGGACACTCCAGATGTCTGGGGAGACATCTGGAGGCCCCGCCGCTGCGGGCCAGGGACGGGCACCCGGTTACGCTCGCTACCAGTCTGGCTGTGGTGGGGAGGGTTCCTGGCACAGTGATTTGGTGCACAAATATAAACGAAAATCACATTGCCAGGGATTTCCACCCTTACACAGGCAGCTCTCCAGGTGACCCAGGTGGCATCGGTATGTTCTGCCCGTCAGGGTACGTCGTTTCTGTTTCCCGATCTTGGCCCTCTATGGTCTATGGAAACAAGATCATGTAAAATAATACTCAACTCCAGATAAAAGCTGTTTTCAGCTCTCACACAGGGATTTACAGATTACTTCCTGGTATTAGCTCCTTACAAATGGGAACTGTGGGAAACTGAGCCTACTTTGGCAGCCTTTACTTATAGACATAAGGAGTGGATAGATCCAAAGTGCAAAGAGTGTTTTACCTTCTATAGAAGTCTACAAAGTACTTCCAGCCTTAGAGGAATCAATCAACGTTCCTCCAGACTGCCAGTAAAAGTCTATTTTcctcatgtgcatcctgtagtgAGCAGCCACTTGCTAAAGGCACAGAGCTTAGCTAATTGGTGAGCATTGATCCCTCTTATGTGTTGTTCACAGTGGCTAAGTTCAGTGCCTGCGGTGAAATAGTTGATGCAGCAGGATGTGCTCCAAACGATGGCGATGAACGAGTACTGGCTGAGTTCTGAGATGTGAAGACGAAGGAAGAaggtgggaagagagggagagataatgaTGGAGGAGTGAGGTGTTGCGTGGGCATGGAGACAGAGGCAACAGCGGGATACAGCACGATCCCCGTAAAGAGCAGAGGAAAGAAGGCTGCTGGGGGAATGTCAGGCCAGCCCTGGCATGCCCAGTTCCACACTccatctcagtcagtcagtcagagcacAGCGCCTGGCTTTGGCACTCGGCACTGGCACTGATTTATGTGGCAGAGGATGGGGCACAGctcacctcacctcctccccagaGCTGAGCTGGTGTGTGGGCTATGCTGCACTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCATACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGTCTGCCCTCTTGTCATACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGCGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGTGGGGCTTGGTACTTGGTATAGAACCATACCAAGCTACCATGCAACTCTGAGGCCAAATTACGAGTGTGTGGAATTCACTTTATGAGTTGACATACATGCAAAACATCTTGTGGGACAGTGGTCAACCCATTTACGTGAGGCACATTTGTGTTTGTGGTTATCTCTGTCCCCTTGTCCATTGGTCAGTTGGTTAATTGTGGGTCATTATTATAGAGTTCTTATGGCCTATTGTAATGTTGTTTTGTCAAGAGGTTTAGACCTCTTGTGGTAACTGCTTAGTAAGGCCTTAAATTGAAAGTTTCTCAGGGGTTACCCATCAAATTGGCTACAGTTTGTTCTGTGGTTTCCATTCGGTCTCAATGTAGAGTGGTAGAGTTTCTAAAGGGATGGACGTGGAGGGTTTAAATACTCTATGGTTGGGGCTGTGCCCTCCTGTGCCTACTGAACTGGTATCAGTTTGAACTCTGAGTACTGGCTCAGTTCAGCAGGAACAGGAGTGGAGCCCACTGTGTGCCATTACGCCCTCCAATCAGCATGCAGAAAGACATCCAGTACCGCATTAGCCCTGCCCACCAGACCCCCAAGGGCTTGTGCCATTGGCCTTGATGAAACCCAACATTCCTGTCAGCATTAAACCCTGAGACATCAGACAGAGGCATTGCAGCCTGTGAGAGTTGAATGTCCCTGCTTCAAGCATGAATGTTTCATAACCAGATTTATCATTAGGAACTGGCAGGCAGCATGGAGAAGGTACATTGAATTTGCTGCATACTGATGCAGTTATTCTCCTCAGACTTCATGTTTATTTCAGTATGGCTTTTTTCCCCTTGACAATGCCGCAACCAAGCACACACGCACTCTCTAGCTCTCTGAGCCGTCAGAGGGCAAACGGAGAAACTGAAGTTCATTGTGCGGTAATCCAAGCGAAATGTCTGCTATGTCCATGTAATTGACGTTACCTAGAGAGCCTCATTTTCAGCTGATTGGGAATGTCTGCTATTTTACTTTATGCTCCCCTGCCACAGAGATAATGTCGCACGTTATAAATCAGGACTTTGGAAACATTCTTCATCTCAAGATTTTTCACTCGTAGGATAAAAGAGGTTCATTAACCACACGATCAATCTCAGCTCGTCCAATGGGCCGTGGATTGTAGACGGCATTTGCCGCCTCTTGACATTTTTGCAATGACTTTTAACCTTGAAGAGATTACCTGAATGAAACCTAGTTTTGTAATATGACAAGACTGGTGGATTCTTGTCCTCCGGGCATTGGTCcaaattcatatatttttttttgtatctaTTAGGGGTAAAAACTAGCCTAATCCATCAGACAGGGGATTAACATCAAGCTACTACTTAAAATGTCGCATTTGTGGTTTCTTAACTCTGAGGCATGCTGCTCTTCCTTTGTTGTCACAGGTATGTCTTTCATGCTGTTCTGTGAGTCACCACTTTTGCTGTAAATCTCATGTAATCCTACCACAAAATCCATTAATAAAAAAGTATTACTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051822.1 True 3524 mRNA 0.48 2 59608382 59612038

Neighbor

gene id symbol gene type direction distance location
LOC110524184 LOC106613666 coding downstream 44706 59468780 ~ 59563676 (-)
LOC110524182 LOC106613664 coding downstream 160185 59359886 ~ 59448197 (-)
lsg1 lsg1 coding downstream 469953 59131152 ~ 59138429 (-)
tmem44 tmem44 coding downstream 477371 59125081 ~ 59131011 (-)
atp13a3 LOC106613657 coding downstream 493277 59055120 ~ 59115105 (-)
LOC110524188 LOC106613669 coding upstream 53877 59665915 ~ 59709692 (-)
cope LOC106613672 coding upstream 98577 59710615 ~ 59714101 (-)
LOC110524192 LOC106613675 coding upstream 133438 59745476 ~ 59754819 (-)
LOC110524193 LOC106613676 coding upstream 160723 59772761 ~ 59776656 (-)
LOC110524194 LOC106613679 coding upstream 175706 59787744 ~ 59801204 (-)
G421951 NA non-coding downstream 234777 59372985 ~ 59373605 (-)
G421950 NA non-coding downstream 235628 59372319 ~ 59372754 (-)
G421948 NA non-coding downstream 236883 59370649 ~ 59371499 (-)
G421940 NA non-coding downstream 248693 59359109 ~ 59359689 (-)
G421935 NA non-coding downstream 256057 59350846 ~ 59352325 (-)
G422088 NA non-coding upstream 51283 59663321 ~ 59664610 (-)
G422089 NA non-coding upstream 52680 59664718 ~ 59665888 (-)
G422125 LOC106613673 non-coding upstream 106671 59718709 ~ 59734459 (-)
G422138 NA non-coding upstream 128244 59740282 ~ 59740548 (-)
G422139 LOC106613674 non-coding upstream 129366 59741404 ~ 59741629 (-)
G420982 LOC106613655 other downstream 572083 59026103 ~ 59036299 (-)
G420421 NA other downstream 1194239 58413128 ~ 58414143 (-)
G420193 NA other downstream 1494322 58112387 ~ 58114060 (-)
G419714 NA other downstream 1902446 57699745 ~ 57705936 (-)
G422347 NA other upstream 488727 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 1446956 61058949 ~ 61081864 (-)
G424474 NA other upstream 2004832 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 2037929 61649967 ~ 61651775 (-)
G424502 NA other upstream 2046995 61659033 ~ 61659585 (-)

Expression


Co-expression Network