RNA id: XR_005051822.1


Basic Information

Item Value
RNA id XR_005051822.1
length 3524
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC118964629
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59608382 ~ 59612038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTACCTATGTGAAGTGTTTTGGGACAACTTGTCTTTACATAATATATGTCTTATGTCTACGGTATGTTTCATGTCCTGTTTTTCTCTAGTTCTGGTGTTATTGGGAGTATTGATGTCCAGTAGCAATAGAGAGTGCTCCAGCCATCCCAAACAAGAACAATGTTTTCCCTCTGAGTCACTCCAAACAATGAGCCTTGACTGAACAGCTGTGTCTGCATATTCCAACCAGCCTCCACATCTGCTGCTTTGCCTGCTTCTCTCTGACGCAAACAGCATGCAACCAAAGTCTGCACAGCCATTCCTCATGTTCACTTACTTCATCAAAACCGCCTTTCGTTATGGAGATCAGACTATTGTCTTCCATATCAGTCTCATCTGTATTGCATGGTGAACAGTAGGTCATCTTTTCCCCCGGTCAGTGCTGAGGTGGTGACggcttctctcccctctctttctcccttcaggGTTGGTCTGACTTGGGAGCAGCCAGAGGACAGCCAGAGGACACTCCAGATGTCTGGGGAGACATCTGGAGGCCCCGCCGCTGCGGGCCAGGGACGGGCACCCGGTTACGCTCGCTACCAGTCTGGCTGTGGTGGGGAGGGTTCCTGGCACAGTGATTTGGTGCACAAATATAAACGAAAATCACATTGCCAGGGATTTCCACCCTTACACAGGCAGCTCTCCAGGTGACCCAGGTGGCATCGGTATGTTCTGCCCGTCAGGGTACGTCGTTTCTGTTTCCCGATCTTGGCCCTCTATGGTCTATGGAAACAAGATCATGTAAAATAATACTCAACTCCAGATAAAAGCTGTTTTCAGCTCTCACACAGGGATTTACAGATTACTTCCTGGTATTAGCTCCTTACAAATGGGAACTGTGGGAAACTGAGCCTACTTTGGCAGCCTTTACTTATAGACATAAGGAGTGGATAGATCCAAAGTGCAAAGAGTGTTTTACCTTCTATAGAAGTCTACAAAGTACTTCCAGCCTTAGAGGAATCAATCAACGTTCCTCCAGACTGCCAGTAAAAGTCTATTTTcctcatgtgcatcctgtagtgAGCAGCCACTTGCTAAAGGCACAGAGCTTAGCTAATTGGTGAGCATTGATCCCTCTTATGTGTTGTTCACAGTGGCTAAGTTCAGTGCCTGCGGTGAAATAGTTGATGCAGCAGGATGTGCTCCAAACGATGGCGATGAACGAGTACTGGCTGAGTTCTGAGATGTGAAGACGAAGGAAGAaggtgggaagagagggagagataatgaTGGAGGAGTGAGGTGTTGCGTGGGCATGGAGACAGAGGCAACAGCGGGATACAGCACGATCCCCGTAAAGAGCAGAGGAAAGAAGGCTGCTGGGGGAATGTCAGGCCAGCCCTGGCATGCCCAGTTCCACACTccatctcagtcagtcagtcagagcacAGCGCCTGGCTTTGGCACTCGGCACTGGCACTGATTTATGTGGCAGAGGATGGGGCACAGctcacctcacctcctccccagaGCTGAGCTGGTGTGTGGGCTATGCTGCACTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCATACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGTCTGCCCTCTTGTCATACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGCGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGGTGTGTGGGCTAGGCTGCCCTCTTGTCACACTCTGAGCTGTGGGGCTTGGTACTTGGTATAGAACCATACCAAGCTACCATGCAACTCTGAGGCCAAATTACGAGTGTGTGGAATTCACTTTATGAGTTGACATACATGCAAAACATCTTGTGGGACAGTGGTCAACCCATTTACGTGAGGCACATTTGTGTTTGTGGTTATCTCTGTCCCCTTGTCCATTGGTCAGTTGGTTAATTGTGGGTCATTATTATAGAGTTCTTATGGCCTATTGTAATGTTGTTTTGTCAAGAGGTTTAGACCTCTTGTGGTAACTGCTTAGTAAGGCCTTAAATTGAAAGTTTCTCAGGGGTTACCCATCAAATTGGCTACAGTTTGTTCTGTGGTTTCCATTCGGTCTCAATGTAGAGTGGTAGAGTTTCTAAAGGGATGGACGTGGAGGGTTTAAATACTCTATGGTTGGGGCTGTGCCCTCCTGTGCCTACTGAACTGGTATCAGTTTGAACTCTGAGTACTGGCTCAGTTCAGCAGGAACAGGAGTGGAGCCCACTGTGTGCCATTACGCCCTCCAATCAGCATGCAGAAAGACATCCAGTACCGCATTAGCCCTGCCCACCAGACCCCCAAGGGCTTGTGCCATTGGCCTTGATGAAACCCAACATTCCTGTCAGCATTAAACCCTGAGACATCAGACAGAGGCATTGCAGCCTGTGAGAGTTGAATGTCCCTGCTTCAAGCATGAATGTTTCATAACCAGATTTATCATTAGGAACTGGCAGGCAGCATGGAGAAGGTACATTGAATTTGCTGCATACTGATGCAGTTATTCTCCTCAGACTTCATGTTTATTTCAGTATGGCTTTTTTCCCCTTGACAATGCCGCAACCAAGCACACACGCACTCTCTAGCTCTCTGAGCCGTCAGAGGGCAAACGGAGAAACTGAAGTTCATTGTGCGGTAATCCAAGCGAAATGTCTGCTATGTCCATGTAATTGACGTTACCTAGAGAGCCTCATTTTCAGCTGATTGGGAATGTCTGCTATTTTACTTTATGCTCCCCTGCCACAGAGATAATGTCGCACGTTATAAATCAGGACTTTGGAAACATTCTTCATCTCAAGATTTTTCACTCGTAGGATAAAAGAGGTTCATTAACCACACGATCAATCTCAGCTCGTCCAATGGGCCGTGGATTGTAGACGGCATTTGCCGCCTCTTGACATTTTTGCAATGACTTTTAACCTTGAAGAGATTACCTGAATGAAACCTAGTTTTGTAATATGACAAGACTGGTGGATTCTTGTCCTCCGGGCATTGGTCcaaattcatatatttttttttgtatctaTTAGGGGTAAAAACTAGCCTAATCCATCAGACAGGGGATTAACATCAAGCTACTACTTAAAATGTCGCATTTGTGGTTTCTTAACTCTGAGGCATGCTGCTCTTCCTTTGTTGTCACAGGTATGTCTTTCATGCTGTTCTGTGAGTCACCACTTTTGCTGTAAATCTCATGTAATCCTACCACAAAATCCATTAATAAAAAAGTATTACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478149 lncRNA downstream 234777 59372985 ~ 59373605 (-) False G421951
TU478150 lncRNA downstream 234991 59372985 ~ 59373391 (-) True G421951
TU478148 lncRNA downstream 235628 59372319 ~ 59372754 (-) True G421950
TU478146 lncRNA downstream 236883 59370649 ~ 59371499 (-) False G421948
TU478145 lncRNA downstream 236883 59370980 ~ 59371499 (-) True G421948
TU478292 lncRNA upstream 51283 59663321 ~ 59664610 (-) True G422088
TU478293 lncRNA upstream 52680 59664718 ~ 59665888 (-) True G422089
TU478336 lncRNA upstream 106671 59718709 ~ 59731791 (-) False G422125
TU478339 lncRNA upstream 120021 59732059 ~ 59734459 (-) False G422125
TU478332 lncRNA upstream 120178 59732216 ~ 59734459 (-) True G422125
XM_021603586.2 mRNA downstream 44706 59468780 ~ 59563676 (-) True LOC110524184
XM_021603585.2 mRNA downstream 44709 59468780 ~ 59563673 (-) False LOC110524184
XM_021603587.2 mRNA downstream 44709 59468780 ~ 59563673 (-) False LOC110524184
XM_021603588.2 mRNA downstream 44709 59468780 ~ 59563673 (-) False LOC110524184
XM_021603589.2 mRNA downstream 44709 59468780 ~ 59563673 (-) False LOC110524184
XM_021603602.2 mRNA upstream 53877 59665915 ~ 59709687 (-) False LOC110524188
XM_021603601.2 mRNA upstream 53877 59665915 ~ 59709692 (-) True LOC110524188
XM_021603603.2 mRNA upstream 98577 59710615 ~ 59714101 (-) True cope
XM_021603608.2 mRNA upstream 133438 59745476 ~ 59754819 (-) True LOC110524192
XM_021603609.2 mRNA upstream 160723 59772761 ~ 59776655 (-) False LOC110524193
TU477230 other downstream 470125 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 572083 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1194239 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1494322 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1902446 57699745 ~ 57705936 (-) True G419714
TU478587 other upstream 488727 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1446956 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2004832 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 2037929 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 2046995 61659033 ~ 61659585 (-) True G424502

Expression Profile