RNA id: TU477230


Basic Information

Item Value
RNA id TU477230
length 1725
RNA type TUCP
GC content 0.51
exon number 8
gene id lsg1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59131152 ~ 59138429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAATTCTCACATGGGCTACATTTTTACAAAAACAGATTTGTGGTAACGTTAACAAGCAAGGCTAAACAAAAATCGAAAAAATGGGTAAGAAAAAGTCTGCCATGGGGCTCGGGAGATCACTGATAAAGGAGAGACTCAACGCAGGCCGAGGCAACAAGAGGGGCGATACTTGGCTCCACACCAGTGAACTGAACGATGGCTACGACTGGGGTCGTCTCAACCTGCAGTCAGTGACTGAACAGAGCTCTATGGATGACTTCCTTGCAACTGCTGAAATGGCCGGGACAGAGTTTGTTGCAGAAAAGCTCAACATCAAGTTTGTGGCAGCTGAAGCTCGGGCAGGATTACTGACAGCCGAGGAGACGGCAAAGCTGAAGAAGCTGCACGAGGAGAACAAACAACTCCTCAGAATTCCACGAAGGCCTCACTGGGATGAAGGCACCAGTCCAGAGGTCCtccagcagacagagagagacagcttcCTGGAGTGGAGAAGAGAACTGGCAGaGCTTGAAGAGGAGCAGAAAATGATTCTCACACCTTTTGAGAGGAATTTGGATTTCTGGAGACAGCTCTGGAGAGTGATTGAGAGGAGGTAGGAATCAGAGCTGCTCGGTCTTGTGACACTGATTGTCAGCTGTTCGATGCCTTGTATGATGGTGGAAATGTTGTGAATTTCCCTCCGCAGTGACATTGTTGTTCAGATTGTTGATGCCAGAAACCCATTGCTATTTCGTTGCCCTGACCTGGTAAGTAAAGGGCCTAAGGCTGTCACATCAAACAATTGAGGCCAATTTTTCTTGAATGTGGGATGAAATTGCCAGGTGGGGGAACCCACCCCACCAAACTGATAGTAGGGGAAACATTGCGGTATTTCACCCATTGATCTTCCTGGTTCCTGTAGGAGTGCTATGTAAAAGAGGTGTCCCGGTACAAGGTGAACTTGTTGCTGGTGAACAAGGCTGACCTGCTGACCCGGCAGCAGCGGAGGATCTGGGCCAGATACTTCCAGAGAGAGGGCCTCCGCGCTGTGTTCTGGTCCGCACTGGTGGAGAACGAGAGGCTGGAGGCAGAGGAGAAGGGAATGGAagtggaggagcaggaggatGAAAAGAGCGAAGCGGAGGATGAAGGTGAGGGAATGCCAGACAACGACAATATGAGCCGAAGACAGGAGGTAGAGGATAACAAGGAGAAGAATGAGGAAGAGAGCGAGGAGGAAGATGATGAGGAGAGCGATATGGAAGGGGAGCAGTTTAAAGACTGCGTAGCAGAGGGAGACTGGCAGACGGCATCGGAGGGTGAAGAGGCATCAGAGGATGAGGAGGCAGATGACGAAGAGAGTATAGATGGCTCCACCCACGGCTCCTCCTTCCACAACTCCAGTCGCCTGCTGACAAAAGATGAGCTGCTTGCCATATTTAAGGCGGCTCACGATGGGCCAACATTGAAAGAGGGCGAGCTCACAGTGGGGCTGGTGGGGTATCCCAATGTGGGCAAAAGTTCGACCATCAACACCATTCTGAGAAATAAGAAGGTGTCCGTCTCAGTCACGCCTGGGCACACCAAGCACTTTCAGacGCTGTATGTGGAGccaggtctgtgtctgtgtgactgccCTGGCCTGGTCATGCCCTCCTTTGTGTCCACTAAAGCTGAGATGATGTGCTGTGGGATCCTACCCATCGACCAGATACGAGACCATGTGCCTGCCATCTCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477193 lncRNA downstream 10835 59121749 ~ 59122035 (-) True G421079
TU477191 lncRNA downstream 11585 59121060 ~ 59121285 (-) True G421077
TU477087 lncRNA downstream 79133 59047705 ~ 59053737 (-) True G420981
TU477148 lncRNA downstream 87223 59045370 ~ 59045647 (-) True G421034
TU477101 lncRNA downstream 182877 58949757 ~ 58949993 (-) True G420992
TU477256 lncRNA upstream 28116 59166373 ~ 59166782 (-) True G421137
TU477257 lncRNA upstream 28656 59166913 ~ 59169292 (-) True G421138
TU477260 lncRNA upstream 33869 59172126 ~ 59172338 (-) True G421141
TU477263 lncRNA upstream 35357 59173614 ~ 59173934 (-) True G421144
TU478132 lncRNA upstream 212589 59350846 ~ 59352325 (-) True G421935
XM_021603572.2 mRNA downstream 1859 59125081 ~ 59131011 (-) False tmem44
XM_021603573.2 mRNA downstream 1859 59125081 ~ 59131011 (-) True tmem44
XM_021603568.2 mRNA downstream 17765 59055120 ~ 59115105 (-) False atp13a3
XM_021603569.2 mRNA downstream 17765 59055120 ~ 59115105 (-) False atp13a3
XM_036977976.1 mRNA downstream 17765 59055120 ~ 59115105 (-) False atp13a3
XM_036977978.1 mRNA upstream 221629 59359886 ~ 59448197 (-) True LOC110524182
XM_021603592.2 mRNA upstream 330523 59468780 ~ 59563672 (-) False LOC110524184
XM_021603585.2 mRNA upstream 330523 59468780 ~ 59563673 (-) False LOC110524184
XM_021603587.2 mRNA upstream 330523 59468780 ~ 59563673 (-) False LOC110524184
XM_021603588.2 mRNA upstream 330523 59468780 ~ 59563673 (-) False LOC110524184
TU477090 other downstream 96571 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 718727 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1018810 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1426934 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1506696 57620054 ~ 57626174 (-) True LOC110524128
TU478587 other upstream 962508 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1920737 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2478613 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 2511710 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 2520776 61659033 ~ 61659585 (-) True G424502

Expression Profile