RNA id: XM_021603568.2


Basic Information

Item Value
RNA id XM_021603568.2
length 5215
RNA type mRNA
GC content 0.54
exon number 32
gene id atp13a3
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59055120 ~ 59115105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGCAGAGTACAACCATGAATGAAATGTAACGCTAGATTGTAATGTTTAAAGACAACAAATGTGACCCAACGAGGTGAATGAATAGAAGATTTCATAAGGAAAGAATGTGTGCCATTTCACCTTGCGTAGGTTCTCTCGTGATCTCATATCCTGTGACAAACATCCTCTTGGTAAGTGAGCCAGTTTCAGGCAGTTCATTCGACGACTCATTCGCTCGCTCTTCCACTGAGCTGTCAAACACGTTAGATATTAAAATATAGATGGCCAGCTAGCTAAGGAACTATTTGACTCTTCAACAACGTTTTCCCATTTAACAATAGCTGTTCTCGTCTTACTATGACTCTCAGGTGATCTTCAGAGAGTCCAGGCGGTTCTGgGGTCCAGGCTCGTGTCGTGAGAGGGAGAGCTACAGAGGGGAGGAGGAACGTCTGGGGGCGTCGCTGCCCGGGTTCTCAAGCGGTGCTCAGTGGGCTTGGTGACTCATCTGCAGAATGGAGAAAGAAGACCTGAAGATCGTGAAcaaggatgaggaggatgagatgGAGCTCCAGGGGTACCGTGTGTGTCGGTGGCGTGTGGCGGTGGTGGGTTTTTGGGTGCTCTGTACGGGGGGCTTCCTTCTGCTGCTGCTCTACTGGATGCCAGAATGGTGTGTGAAGGCCACCTGTAGCCGGACCACTGTCAGAGAGGCCGAAGTGGTGCTGCTCCAATCCACTgatGAGTTTAAGCGCTGGTTCCTAGCCAAGGTGCGTGTGATGCTGGCCCCCGGGAGGAACCCCTTTGACAGCCTGGAGACCCAGACCACTCCCCCCATGGCCAACGGACACTCCCCCCACTCCTCGAACAGCCCCACCCAGGAGTTCAACAGGAAGTACGCAGAGTACCAGCCCACTCAGATTCGCTATTTTACACTCCATAGCACAAAGTACTACTGGAATGACGAGGTCCAGAATTTTGAGGTGTTAACgggCTTGGAAGACCTGGAGGTGACCTGTTCCAACATCCACTCAGAGCACAGCACGGGGCTCACCAGCAACCAGCAGGAGTACAGGAGACTGTTTTTCGGAGTGAATGAAATTGCAGTGAAAGTGCCTTCAGTTTTCAAGCTGCTAATCAAAGAGGTCCTCAACCCTTTCTACATCTTCCAGCTCTTCAGTGTGATCCTGTGGAGCGCCGACGAGTACTACTACTACGCCGTAGCCATCGTCTTCATGTCGGTCATATCCATAGCTACCTCTCTGTACACCATTAAAAAGCAATACGTCATGCTTCACGACATGGTGGCAGCACACAGTATTGTCCGTGTTTCAGTCTGCAGAGCCAACAACGCAGACATCGAGGAGGCCCTGTCCACTGACCTGGTGCCCGGCGATGTCATGGTCATCCCTAGCAACGGGACCATCATGCCGTGCGATGCGGTGCTGGTCAGCGGCACCTGCATTGTCAACGAGAGCATGCTGACAGGTGAGAGTGTGCCGGTCACCAAGACCAACCTCCCCAACCCGGGTGAGGGGGACAAGGAGGGTGACGGGGCCTACAGCATGGAGGAGCACAAGAGACACACCCTCTTCTGTGGCACGCACATCATCCAGACCCGTTTCTACTCAGGGGAACTGGTCAAGGCAGTGGTGGTCCGCACAGGCTTCAGCACAGCTAAGGGCCAGCTGGTGCGCTCCATCCTCTACCCCAAGCCCACGGACTTCAAGCTGTACCGCGACGCCTACCTCTTCCTGCTGTGCCTGGTGGCTATAGCCGGTATCGGCTTTGTCTACTCCATTGTCCTCAGCATAATGAACAAGGTACCAGCCAAGACCATCATCATCGAGTCCCTggacatcatcaccatcaccgtGCCCCCCGCGCTGCCCGCTGCCATGACGGCGGGCATCGTGTACGCCCAGCGCCGCCTCAAACGCATCGGCATCTTCTGCATCAGCCCCCAGAGGATCAACATCTGTGGCCAGCTCAACCTGGTCTGCTTCGACAAgACGGGTACACTCACAGAGGATGGACTAGACTTATGGGGAGTCCAGAGAGTGGAGAATGGCTCTTTCCACCTGTCAGAGGAGAATGCTTACAAGGAGAGTCTGGTCAAGTCCCAGTTTGTAGCCTGCATGGCCACCTGCCACTCTCTTACCAAGATTGATGGCCAGCTGTCCGGAGACCCTCTGGACCTGAAGATGTTTGAGGCCACAGGTTGGATCCTGGAGGAGGCCACTGAGGAGGAGACCTCCCTCCACGACCGCATCATGCCCACCGTGGTGCGGCCCCCCAAGCAGCTGATGCCCCCCGAGCCCGTCATGTCACCCGAACAGGACATGGAGCTGTATGACTTGTCGTTGGCCTATGAGATTGGTATTGTGCGTCAGTTCCCCTTCTCCTCGGCGCTGCAGAGGATGTGTGTGGTAGCCCGTCTGCTGGGGGAGAAGCGCATGGATGCCTACCTCAAGGGGGCGCCAGAGGTGGTGGCCAGCCTCTGCAAGAAAGACACTGTTCCAGAGGACTTTGCGGATGTTCTGGAGGACTACACCAAGCAGGGCTTCCGTGTCATCGCCCTGGCCCACCGCCGCCTCGAGTCCAAACTCACCTGGCACAAAGTCCAGAACGTCAACAGGGACCAGATGGAGGCCAACATGGAGTTCCTGGGGCTGATCATCATGCAGAACAAGCTGAAGGCTGAGACCGCCGGGGTACTGGAGGACCTCCGCAGGGCACACATCCGCACCGTCATGGTCACTGGTGACAACATGTTGACGGCCATCTCAGTGGCCAGGGACTGTGGCATGATCCCCCCTCAGGACCGGGTCATCATCGCCGACGCGCTGCCCTCCAAAGATGGTCAGTCGGCCAAGATCAACTGGCGCTACGCAGACAAACCCAGCAAACATGTGGGCAAAGCCCCACGCCTGGAGGAAATAGAGATCAGTCTAGAGGATGTGTGTCACACTGACGAGCCCACGTCTCAGGACCAGTACCACTTCGCCATGAGTGGCAAGTCCTTTGCTGTCATCTCTGAGCACTTTCAGGATGTGCTGCAGAAGTTGGTGCTGCATGGGACAGTGTTTGCCCGAATGGCCCCCGACCAGAAGACCCAGCTCATTGAAGCACTGCAGAGTGTGGACTATTTTGTGGGCATGTGTGGAGATGGCGCAAATGATTGTGGTGCTTTGAAGAGGGCTCATGGTGGGATCTCTCTCTCCGAGCTGGAGGCCTCTGTAgcctctcccttcacctccagGACCCCCAACATCTCCTGTGTGCCCAGCCTCATCAGAGAAGGGCGAGCGGCTCTCATCACCTCCTTCTGTGTGTTCAAGTTCATGGCCCTCTACAGCATCATCCAGTACATCAGTGTCACCCTGCTCTACTCTATCCTCAGTAACCTGGGAGACTTCCAGTTCCTCTTTATCGACATCGCTATCATCCTCCTCATCGTCTTCACCAtgtctctgAACCCAGCGTGGAAGGAGCTGGTGTCGAGGCGTCCCCCCTCAGGTCTGATCTCAGGCCCTCTGCTGTTCTCCGTACTGACTCAGATCCTCATCTGTCTGGGCTTCCAGACCATCGCTTTCCTCTGGGTCCGACACCAGGCCTGGTACGACATCTGGACGCCAGAGTCTGAtgCCTGCAACTCGTCCCCCCATGCCAACTTCTCCCCGAAGCACAACTCCTCTGAAGACGACCACAACATCAAGAACTACGAGAACACCTCCCTGTTCTACGTCTCCTCCTTCCAGTACCTCATCGTGGCCATCGTCTTCTCCAAGGGGAAGCCCTTCAGACAGCCCAGCTACAAAAACTGGCCCTTCGTGGTGTCATGTATTGGCTTGTACATATTTCTGTTCTTCATCATGTTCTACCCTGTGTCTGCTATCGATGAATTCCTAGAGaTTGTGTGTGTTCCATTTGAATGGAGAATCGCTCTGTTCTTCATCATCGTAGTCAATGCAGCCGTGTCTGTCTTGGCggagACCCTCGTCCTTGACGTCGTCTTATGGAAGCTTGTGTTCAGCCGAGACAAGCAGGGCAGCTATGGCACCACCCCCGCCACCCCGACAACACAGGGTGGCATAGACCTCTGGGGACCCAAGTGTCTGTCGTGGCTGTGCTGCCGGCAGAGGAAGGTACCCAAGGCACTCTACATGCACCTGGCCCAGGAGCTGAGTGTGGACCCCGACTGGCCCCCcaaacccaccaccaccaccgaaGCCAATCCCCCGCCGCCCGGCAACACCCCAGAAAACTGCTCCTCCTGCCAGATCATGGCCGATTCCTAGCACCCCCCCGCCCCCGATATTGCTAAAGTAGATATACATACACGACCAAAAGGACAAACTGTTGTCTATGAAAAGGACGAGGCGAAAGACTATGAAAGATGGGGTGATGGTAAAAATGGTTTGTGGGATGGACAAATGGGAGTGTCCAGGTATCTGGTCTCTCCATGCTCTTTGCTGCTCAGATCCATCACAGTGTTCAGAACCTGGCTAGTCTACATAAGCCCCACCAACCAAACCCCTCAACCTGCCACCACCCCCTGGTCTACAAAGGTTTGTCTACTACACAAATACATCCCAAGGATAGTTTACTCCAGCGATTCTCAACTGGTGGGTCACAACCCAAATTTGGGTCACGGGTGGTTTTGAATGGGTCGCAGTTGTCTGGACTTAAACGACTAAAACCAGTTAGAAAGTGATTAAATAATGTAATCTGACCTATTTTTCTTCAATCACTATTTTCAATATAGAGCTAATTAGCGGCACTATGTTAGTTGATTTTGTGGTCTCAAACCAGTGAGTTTATTGACATACATTTTTCCAGATTGCATTGCTAATTTTCTTTGTGATGCaaatacactatatgaccaaaggtatgtggacacctgcttgtcaaacatctcattccaaaatcatgggcattaatattgagtcggtgccccctttgctgctacaacagcctccactcttctgggaagtctttccactagatgttggaacattgctgtgaggATTTGCTCCATTCAtacacaagcattagtgaggtcaggcactggtGTTGGGCAATTAAGTCTGGATCACAAAGGTGCTCaatggtgttgaggtcagggctctatgcaggccagtcaagtgcttccacaccaatctcgacaaacaatttctgtatggaccttgatttgtgcacaggggcattgtcatgctataACAGtgaaggacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477087 lncRNA downstream 1383 59047705 ~ 59053737 (-) True G420981
TU477148 lncRNA downstream 9473 59045370 ~ 59045647 (-) True G421034
TU477101 lncRNA downstream 105127 58949757 ~ 58949993 (-) True G420992
TU477062 lncRNA downstream 147776 58907063 ~ 58907344 (-) True G420968
TU477057 lncRNA downstream 152372 58899153 ~ 58902748 (-) False G420964
TU477191 lncRNA upstream 5955 59121060 ~ 59121285 (-) True G421077
TU477193 lncRNA upstream 6644 59121749 ~ 59122035 (-) True G421079
TU477256 lncRNA upstream 51268 59166373 ~ 59166782 (-) True G421137
TU477257 lncRNA upstream 51808 59166913 ~ 59169292 (-) True G421138
TU477260 lncRNA upstream 57021 59172126 ~ 59172338 (-) True G421141
trnaa-ugc-13 mRNA downstream 28522 59026526 ~ 59026598 (-) True trnaa-ugc-13
XR_005051821.1 mRNA downstream 53540 58982688 ~ 59001580 (-) True LOC118964628
XM_021603553.2 mRNA downstream 198673 58852019 ~ 58856447 (-) True gamt
XR_005051820.1 mRNA downstream 219009 58834262 ~ 58836111 (-) True LOC110524167
XM_021603545.2 mRNA downstream 379192 58671471 ~ 58675928 (-) True LOC110524158
XM_021603572.2 mRNA upstream 9976 59125081 ~ 59131011 (-) False tmem44
XM_021603573.2 mRNA upstream 9976 59125081 ~ 59131011 (-) True tmem44
XM_021603571.2 mRNA upstream 16047 59131152 ~ 59138429 (-) False lsg1
XM_036977978.1 mRNA upstream 244781 59359886 ~ 59448197 (-) True LOC110524182
XM_021603592.2 mRNA upstream 353675 59468780 ~ 59563672 (-) False LOC110524184
TU477090 other downstream 18821 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 640977 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 941060 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1349184 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1428946 57620054 ~ 57626174 (-) True LOC110524128
TU477230 other upstream 17765 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 985660 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1943889 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2501765 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 2534862 61649967 ~ 61651775 (-) True G424499

Expression Profile