RNA id: XR_005051821.1


Basic Information

Item Value
RNA id XR_005051821.1
length 1373
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118964628
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58982688 ~ 59001580 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCTCCAGGTAATCGAGCTCAAAACTTGCGGACTTCCCCCCCAACACGTTCAAGAGGGAAATACATGTGTATACCCTGTAGCTGTAGAGGGAAGTGGGCAACATATTTACAAAAGGACTGCAGAGCCTGCCGTGAGCTGGAGAACTTGCTAGAGATAAAGCCCTTCCTCTATGTGGTTCATGCCAAAGCTCGTGGAGTGTGAGGTATTATACAAGTCTTTTCAATCCCACTAGTTAGTAGTGAATTATTGTGTCATAAGTACATTGTAATCAGTGTCATAAGTACATTGTTTCTTCGTAAGAAGATCACGTTCATTCTCACCCAATACATATATCAAATGGGGAGGGGCCAACCAGGAGAGTGCAGCCTGTACACTTGGGGAGGAAGTTGAACAGGCAAACGCCTTCATCTTGAAGATATACTGTATTTGGTGCAAATAGCTGTCGCAATACATGGAACTGGTTTGCCTGGGTGTAGCTTTGTGTATGTGGCTGTCAGTGAGGTTAAAGGATACATTTTAAAGTTGAAAAAACCCTGTCCTAGCACTTGTGTCAGCTACGTAGTCTAGATTTCAATGACTGGTTTGCGTTCTGCTTTAAATGAAAACTGCACTCGTCTCTGTAAATGTGACTTCTTCAACAGAGCACTGAACCAGCGCAGTTGGCGTTTCACCCATATGAGTGCTACCCTGAGCAAATCATTCCGTGAGACCAAGCAAAAACTTCTGAATGAAAAGGAGAGTCTTGAAGTTCTGAAGAACCTAATGTCTGTGAATGATGGCCCGGTAAGGCAGTGAGTCACTGATGTCCAGGAGTGGGAATCCCACGGACTCGTCTTGTTCATTGGCAGGGCTTACCTTGACAGGACAAACCTCCATGCCTCTGGCTGGTGCCTGGATGAGGGGGTCCTGGGACTCCTTCAGGGAGAAGTCTTGGAGGTCGAGTGTCCTGGAGGGCCTGcactcctccctccaccaccacaacaccacccCTGCCAATAGCACACTCAGGACAACTGGGCAGAAAATATAGACTGAAATATTGTCCAGAAAGGACCACATTGGACAGAAAGGGGCACACCTTATTGGACTAATAAGACATAATAAAGGCCTTAATGGCTACTTATATAGACACGTATAAACTACAAATGAGTGGTTATTATGTATACCTGAAAATAAAGTGTTACCGCTTTTTTTTTGCATATAAACCATAAGCTGCTATTTCTATAAACTCTAAGTACTGACACTTATACCCATATTTACATAAAATTGTCATTATTTGAATCTTTCTTTACACCTGAGCAATATCATCTCTCCAGTACAGTTCCATAGATGGCATGATATAAACAGACCGTAAGGGATCTAAATGTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477101 lncRNA downstream 32695 58949757 ~ 58949993 (-) True G420992
TU477062 lncRNA downstream 75344 58907063 ~ 58907344 (-) True G420968
TU477057 lncRNA downstream 79940 58899153 ~ 58902748 (-) False G420964
TU477058 lncRNA downstream 79940 58899153 ~ 58902748 (-) True G420964
TU477056 lncRNA downstream 83803 58898437 ~ 58898885 (-) True G420963
TU477148 lncRNA upstream 43790 59045370 ~ 59045647 (-) True G421034
TU477087 lncRNA upstream 46125 59047705 ~ 59053737 (-) True G420981
TU477191 lncRNA upstream 119480 59121060 ~ 59121285 (-) True G421077
TU477193 lncRNA upstream 120169 59121749 ~ 59122035 (-) True G421079
TU477256 lncRNA upstream 164793 59166373 ~ 59166782 (-) True G421137
XM_021603553.2 mRNA downstream 126241 58852019 ~ 58856447 (-) True gamt
XR_005051820.1 mRNA downstream 146577 58834262 ~ 58836111 (-) True LOC110524167
XM_021603545.2 mRNA downstream 306760 58671471 ~ 58675928 (-) True LOC110524158
XM_021603537.2 mRNA downstream 404077 58573258 ~ 58578611 (-) True LOC110524152
XM_021603536.2 mRNA downstream 415005 58546384 ~ 58567683 (-) False LOC110524151
trnaa-ugc-13 mRNA upstream 24946 59026526 ~ 59026598 (-) True trnaa-ugc-13
XM_021603568.2 mRNA upstream 53540 59055120 ~ 59115105 (-) False atp13a3
XM_021603569.2 mRNA upstream 53540 59055120 ~ 59115105 (-) False atp13a3
XM_036977976.1 mRNA upstream 53540 59055120 ~ 59115105 (-) False atp13a3
XM_036977977.1 mRNA upstream 53540 59055120 ~ 59115105 (-) True atp13a3
TU476443 other downstream 568545 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 868628 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1276752 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1356514 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 1371121 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 24523 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 131290 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1099185 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2057414 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2615290 61616870 ~ 61617244 (-) True G424474

Expression Profile