LOC110524249 (LOC106613730)


Basic Information

Item Value
gene id LOC110524249
gene name LOC106613730
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61660149 ~ 61679106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603723.2
GACCGAGGAATATTTTTACTGGAAATCTTCAATTTTTTTTTGAATATTTTATAAGGGTATCCAATTAAATCGTCAACAGGCTTCTCGATCCAATGAAAACGCTTGTCTTTCTGAGGATCGTGGAACCCAAATCCGGGGGTGCGTTCAATTAGCATGACCGCTTGCTACGTTGCGGAACAGTTTGTATTGAACACACGTTTTCCCAAAACGTTCTTTTACGTTCCTGAACAGACTTTGAGATACGTTCGCTCTCCTAGTGTACAGCCCCGTTTTGGTTCAAATGAAACGTTCTATTACGCTTTTATGTACTGAATGCAGCCCGAGTTTCACATGTCATCAGCTGTCAAGACACTGAAAGCTACCTACACGCGTGTGTAGCTAACACTACGAAAAAAACTTCGGATAATTGAAGAGATGGCGCTGATTGGAGTGCAGCTGGTGGTCAGCTTGCTGGCTGCTAGCATCATGCAGAGAATGGCTCCACACTGTTCATTTGCCCGCTGGCTCCTGTGCAATGGCAGTCTTTTCCGGTTCAAACACCCCTCTGAGGGAGAGCTGTGTGCCCTAGCTGGAAAACAGATGCCCAGCAAGCCCAGCAAGAGAGACAGGAGACAGAATGGGGACAGCAAGCCTCTCACAGTTCCCAAGGACATTGACCTTCACTTAGAAAAAGCTCCAGTCGGCGTCCTTGATGCCCTTGTACTGCGATTCTTCCTGGAGTACCAGTGGTTGATTGACTTTGCAGTGTATGCCATGGGCATCTACCTTTTCACCGAGGGCTACTTTTGTGTAGTGGACCCTGCCAAGGAGGTCCACATTGGGGCCATCTGGTGTGTGCTGAccgttctctgctgcctGAAAACCCTCCACTCCCTGATGGGCCACTACTTCAGGTCTGACGAGGGAGGCGAGCGCTCGGTGTGCCTGGCCTTTGGCTTCCTGTCTCttctggtggccatgctggtgcTGGTGGTCAGAGAGGACTACCTGGAGTTTGGCCTGGAGCCTGGTTTTAACAGTCTTTTTGACAACCTTGAGGTTTTCGCAAAACATCAAGGCTTTGCTGAGTGGTCAGTCCCTGTGACCAAGCTGACTGTGAAGTTGGGTCTGGCTGCCATCTGTGCTTTTATTGGTGCTTTGCTGGCCTTCCCTGGCCTCCGCCTAGCCCAGACCCACCTGGACGCAGTTCAGATGAACTCAGACCGCCCATTCATCcaAATGTTGTTGCACATGAGCTTCCTGGCCCCAGTGGTGGTGATCGTGTTGTGGATCAAACCCATTGCTAGGGATTTCCTGGGGAACGCTCCAATGGGGAAGACCTCAGTCACcctTATGTCAAGCGCGGTGTTTGACAGTGTTCGTCTGTGGACAGTGGTGGTTCTGTGCTGCCTGAGGCTGGCCCTCACCCGCTACCACATGCAAGcctacctcaacctctcccagAAGTGGGTGGACCAGATGAAGAAGGAGGCGGGGCGCATTGCCGCCATCGACATCCAGAGGAAGGTGACCCGTGTGTTCTGCTACCTGACCATAGTCACCCTGCAGTACATGGTCCCTGTTCTACTCATCCTCTTCTCTACTCTGGCTCTGAAGGCCCTTGGTGACTTCTCATGGAGTGGCGCAGAGCAGGCTCCGGGGGTGACCCCTGCCCTGGTAATGCCCACGGTCTCTCCCGTCCTGCCAGGGCTGGAGGAGGACGAAGAGGGGGTGGAGGACATGGAGGAGGACATCCAGGCCACGGTGGCCCGTCTAACCGAGGGCTTCTCTGCCCTGCGCTCTGTCCTCACCCCCCTCTTCTTCAGAGGCCTCTTTGCCTTCCTCACCTGGTGGGTGGCTGCCTGCCAAGTCATCAGCAGCTTGTTTGGCATTTACTTCCACCAGTACCTCATGCAGAACTGAAGAGGACTACACTACCCATAATCTCTAGCTAACACCGTGCCAGTGTTCCAGGCAGGTCAAACTCAATACAACAAATGGACAGGATGTGTGTGCTCCTGTCTGTTACTGTAACAAAGGTGTCACCGATATCAAAAGGGATGTGATGGTTTCTGACATGCTGACACCTTACTACTACTACCTTGTTGTCCTGTGGGCCCAGTCAGACCCTTAGACCTTGACCAGGACTATGATGAAATGCTATATAATGTGGACTGGATTCTGTCCAACTGCTATGTATCACATTTCTCTGTTTTAACAAATGCATTTGAAGCCagtgttacttttttattttttattttatcataTAGTATCAGGCAATGTTGCAAATGAGCTGTTTCTAGTCGGAAAAGGTACCACTACTTCCAGCCCAGTTTGCTAGTAGAGGCTGATTTCAGAAGTGCTTGATGCTTTATTTATTTTCGTCCTTTAGTTCTGCTGTACCGTACTGATTGTAATGGACCCGTGGAGTTCAGTCTATTCAGCAGTCATCACCACTCGACCGTCCATTCTCCTTAATCATTAGTTACCCACCTGTTAAAACAAAGCACTGAGGATATTTTACTGTGTTTTAATGGAGGTATTCAGTGAAGAATTCTAAGTGCCTGGAAACTCAGGGATTTTGAGTCAATGATAAGATATCTCTTTTTTTCTGCCAAATAGTAGACGGGTGATAACAGCTATCTATCTGTATCATTCAATAACACTCCAGCCCAGCCTGGATTTGGCAAATCTTACCTGTATTAGCAACCATCTTTCAGTCCCAACAAAGTTTGTCAGTTGAATTTGTTTGAACAAAGTATTTCCTGCGTTTTGTTTTGCTGCCAAACAATCATTTGCACTTAAAAAAGcgtcaatcagcagttgaaacaataacgaAGCACCTTCCCCGCCCCTGTTTCggtaaaagctgagggatggggagggaaaATGTAACCACTCTTTAATGTATAgatagagctatggatgcaaggactgaccatccatgatatcaaaatgatagttttaactgtgttttgaggctatatagtttTCTATATACTTTGtaaacaaacattggagtaaaacaagcttatttgggttctgatggggtagaACACTTGAACTGAGCTCATGAGGCAttaataagttatattcttcaagaatcaatgggtacaatTTATAAGTGAAACATtttatgtagcaactgcagattgcccctttttaGGATGATGTAGGCTTAGAACAAATCTTGCCTAAAACTTAAACCTAGGTCTGAAATGTGTTGCTGATTTTATAGTGTCAACggttaaaaatttaaaaaatgtatttacttatTTATACTCTATTGCCACTGATCATGTTGGAAAGGTACAGGTGTCATGCTGTTGGACTTTTGGGTCGTTTTGTTTTTGGAAAGTGTGATttctgtgtttaaaaaaaaaaatcaaattgaTTGAATGTTTGTTATTCATTTTACGTTGTGGTTTGTATGAAAATGTTTTTTCAACAAAAGACTTATGAATGCATGGTTTGAACTTTTAGTTGTATACAAAATGTTTTATTCTGTTGTCTGTGTGGCAAATGTTACTGGCTTATGAAATTATTAAACTCTTGTTTTAAA

Function

NR:

description
transmembrane protein 161A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603723.2 True 3541 mRNA 0.46 12 61660149 61679106

Neighbor

gene id symbol gene type direction distance location
LOC110524247 LOC106613727 coding downstream 37794 61617987 ~ 61622355 (-)
LOC110522983 LOC106613725 coding downstream 149071 61304113 ~ 61511078 (-)
trnaa-agc-3 NA coding downstream 393380 61266697 ~ 61266769 (-)
LOC110524243 LOC106613723 coding downstream 418143 61139319 ~ 61242006 (-)
tjp3 LOC106613722 coding downstream 528268 61104757 ~ 61131881 (-)
LOC110524252 LOC106613733 coding upstream 84012 61763118 ~ 61786542 (-)
tssk6 LOC106613736 coding upstream 162455 61841561 ~ 61842727 (-)
si:ch211-212d10.2 LOC106613739 coding upstream 354983 62033465 ~ 62037994 (-)
LOC110524260 LOC105011525 coding upstream 397463 62076569 ~ 62083302 (-)
cirbpb LOC106613741 coding upstream 405347 62084453 ~ 62092024 (-)
G424501 LOC106613729 non-coding downstream 3745 61652932 ~ 61656404 (-)
G424500 NA non-coding downstream 7865 61652022 ~ 61652284 (-)
G424497 NA non-coding downstream 10498 61649448 ~ 61649651 (-)
G424487 NA non-coding downstream 22783 61637113 ~ 61637366 (-)
G424483 NA non-coding downstream 31651 61628276 ~ 61628498 (-)
G424512 NA non-coding upstream 1545 61680651 ~ 61680884 (-)
G424514 NA non-coding upstream 4797 61683903 ~ 61684158 (-)
G424515 NA non-coding upstream 5305 61684411 ~ 61684639 (-)
G424535 NA non-coding upstream 32334 61711440 ~ 61711921 (-)
G424586 NA non-coding upstream 158643 61837749 ~ 61844260 (-)
G424502 NA other downstream 564 61659033 ~ 61659585 (-)
G424499 LOC106613729 other downstream 8374 61649967 ~ 61651775 (-)
G424474 NA other downstream 42905 61616870 ~ 61617244 (-)
LOC110524239 LOC106573579 other downstream 589006 61058949 ~ 61081864 (-)
G422347 NA other downstream 1559093 60100765 ~ 60101056 (-)
G424649 NA other upstream 209092 61888198 ~ 61927422 (-)
G424678 NA other upstream 319420 61998526 ~ 62001309 (-)
LOC110524277 LOC106613757 other upstream 1124832 62803832 ~ 62808176 (-)
G425612 NA other upstream 1170898 62850004 ~ 62850247 (-)
G425647 NA other upstream 1215553 62894659 ~ 62900503 (-)

Expression


Co-expression Network