LOC110524252 (LOC106613733)


Basic Information

Item Value
gene id LOC110524252
gene name LOC106613733
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61763118 ~ 61786542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603730.2
GAGAGAAATGTGGCAACGGATCTCGGAAGACGACAGAGGAGTTGAATACTGAATGTGAAACATTGCTAAAGATTGTTCAAGATTGGCCGGATTTGCAACAAACACAGGCACAGTAATCAAGATTAAAGGCGAGGAATTCTGGATTGTCGGGTGTTGACTGACTGTCAGATACTGGGCGTCATCAAGGGCACACATGGCCCATACAGTGCAGGACCACCAGATGGCACAGCCCCAGGCAGCagtgttgtctctccctccctccggccAGGCTAAAAGATGGACAGTGTTGAACTCCCTGCTATGTGGAGCATTGGCAGGAGCCGTGGCCAAAACAGTCATAGCTCCTCTGGACAGAACCAAGATCATCTTCCAAGTGTCTTCACAAAGATTCTCTGCTAAGGAAGCCTTCAGACTCCTCTACTGTACATACATGAAAGATGGCTTCCTCAGTCTGTGGAGGGGCAACTCTGCCACCATGGTGCGGGTTATCCCCTACGCTGCCATCCAGTTCTGCTCCCACGACCAGTACAAGAGAATCCTGGGGGGATACTATGGCTTCCAGGGAAAAGCCCTTACTCCTTTTCCACGTTTCCTGGCAGGGTCGTTGGCTGGCACCACAGCTGCCATGCTCACCTACCCCCTGGACATGGTGCGGGCCAGGATGGCAGTGACACCCAGACAAATGTACAGCAACATTATGCACGTGTTTGTGCGCATTACGCAGGAGGAGGGCATTAAGACCCTGTACAGAGGCTTCTGCCCGACCATCCTGGGAGTGATCCCATACTCAGGAATCACCTTCTTCACATATGAGACCCTCAAGAAACTGCATGCAGAGAGGACTAGGCGGTCCCAGCCGTACTCCTACGAGCGCTTGGCATTTGGCGCGTGTGCTGGCCTACTCGGCCAGTCGGCCTCCTACCCGCTGGACGTGGTTCGCCGACGCATGCAGACGGCCGGGGTGACGGGCCAACAGTACGGCAGCGTCCTGAACACCATGAAAGCGATCGTGGTGCAGGAGGGTGTGgtgcgtggactctacaagggccTCAGTATGAACTGGATCAAAGGGCCTATCGCTGTGGGGGTCAGCTTCACCACCTTTGACCTCATGCACAACCTCCTGCACAAGATGCACCAGTTGGGATACTTCACACACTGAGCCAGCAGAGGGAGCCAGAGGAAAGGTTCACTGTTGAGACTAGAGTTGTCGTCCGTCGGTCACAGACACAATATGGATCCTCTAAGTCAGATAGGGATTGAAAGGGGAGAGTGGATActggacagacaggaggagacagaagcTGTCCATTTATTTAAGCGCACATCCTCTGACACACATTAAGCACGCACAGCCAGACCCCCCACTCTTGCTGTTGATGGATGGGATGTCTGTACTAAGGCTACAATAAGTGTCATCAAGCAGGGTAGATGTTTGATGAGTTTGCAATATGAGAGGTATGAGAATGTGAATGATTTTACATTTCCAGTCCTGATATTTGTTTGAGATTGTGGTATTATCTCTGGTAAGGGCACTTAATGGGGCTGGAGATTATCAGAGGCGAAGAACTTTACAATCGGTTCATTTTAGTATGGAATTTTATCAACTATGCTCACAATGTTTTCTGTTGCTTTAAACTGAAGATTCACTTATATTTTCAACCATGCATTGCTGCTTTTTCTTCTTGATTATTTCCGGGCTTGTTGCAGCTGTAATCCGCTGCTCTGCTCACTTCTGCATTTAGCATCAACGTCTCATGGAAGAGTCACCTAGTGGGCCTTGCTGCCAGAAAATAGTTGGTAGTTGGGGATGTAGTCTTATTCCAAAGAGCTTGTTTCTGTTTTGTGACGGTTAAAAATGTCAATTTTATGACGTGCCAAGATGGAATGTACTGTCAggaaaattattggcacccttgataaagatgagcaaataCTGTATAACAAGTACTGAGCTATAATGTATGCTCAAAAATGAGAAAAttctattttatactaatacagttgctcagagaaagagattttgtttatcaagtaatatttttttctccaaaaaagAGAGGTCAAAATTATTGCCACACTTGTTTTCAATACCTCTCCTTGCGAGGATaacgacactgagcctttttctataatgtttgatgagattggagaacacattgggagggaaattggaccattcctccatacagaggAGTGTGGTTCAAGTCTAGAAActgatggccattgcaaaatgttgatttgtgtggtcaattaactggtgtgcgtggccaaagagctcaattGTCATGTCATCTAACAAATGGAGAttgctaaacggcattggcaGTTGGTTTGGAACCtttgctatggtcagatgacactaCAATAAAGCCCTAGGCTTCCACAGAATGATGCATATGAAGAGAAAAAAACACCTACTGTTccatatggtggtggatctttgatgttattggGGCTAATTTGCTTCCACTGGttctggggcccttgttaaggtcaacggcagcATGAACTTCACCCAGTACAAGGACATTTTAGCCCAAAACCTGATTGCCTCTTCTAGGATGCTGAAacttggccacaagtggatcttccagcaagatgataaccccaagcacacatcaaaatccacaaagtaATGGCTAATTGACCACAAAAATCAACATCAGTCTCCGGACTGGTTTAAATTGAAGAGGGCAGATGAAGGATATcgaggatctggaaggattctgaaTGGAGGAATAGTCtgagatccctcccaatgtgtcaatctcataaaacattttagagaaaGGCCCTGTGGCATTCTCCTCGCAAGGTGACTTTTTAAAACTAGTGATCATTtatatccattgtttaaaaaaagtttttttgtATTGTTATATTTTGTTTATCTGAGCAATTGCATTGGTATAacattttttaatgttttattctCCATTGGACCTGACCGTCGGTGTGCAATAATGCCCTCACGTTGAtgagacagagatggtgatatcataaatagtttatttttattaacAACATGCCTGCAGTCCCTCACACACTGAATGCCATCCTCCATTTAAACAAACTGAAGCGTTTCAGGCAGGAGGCCACAGGTGTGTGCAATCAGCGTATTAGCAAGGCTCGCAAGCAGTCAGCTGACAATAAAGGGACATGTCACTCATTTGAACGTTCAAACCAACAGTTAAAGGTTGTGCTGATGAAATAAAGATGAGTTTATTGGATTTGCACGTTATAATGGATTGACAATTTAGCTAGGATCCtagatatataaatacattcattCATTTTACAGTGAAGGCTACTCCTTCACAGTCAGTAATCATTTCAGCCTGACTGCGCAGTTTCACTATCTGGTGTCTATAAATATAGATTTGTAGTGTCTAACCGGAATCTAATGGATATCATCCATATTTTCCCACTAGATGTTGCCTAAGGCATAAATATATAATCAGTATATTTCTAATATTAAGGTAGTCTTTCTATTATCTGTAGTCTTATTGTGAAGGAAATCCAGTTTGTCATAAATCTGTTTCTATGTTTATTGATACTTTACACAAGAatttctctacacccgcaataacatctgctaaatatgtgtatgtgaccaataaaattggatttgtttgaCTTGATATTGATGTCTTGAATATATTAAAATACTAAAGAACTTA
>XM_021603729.2
GAAAGACAATAATCTCGTGCGCGAGCAAACTCCAATAATTTTGGGATAAAAATAGGCCATCACCTTCCTTGTCGCAGTTTGGCAGCTGTCGTTTTCAATCACCCTGGAAAAAATCGTAAACGCTGAGATAGACGGACAAGTTGACTGATGTGTTGACCACAGATATTGACCCAACGACACCAAACAGTGAGAGAAATGTGGCAACGGATCTCGGAAGACGACAGAGGAGTTGAATACTGAATGTGAAACATTGCTAAAGATTGTTCAAGATTGGCCGGATTTGCAACAAACACAGGCACAGTAATCAAGATTAAAGTGGATTGTCGGGTGTTGACTGACTGTCAGATACTGGGCGTCATCAAGGGCACACATGGCCCATACAGTGCAGGACCACCAGATGGCACAGCCCCAGGCAGCagtgttgtctctccctccctccggccAGGCTAAAAGATGGACAGTGTTGAACTCCCTGCTATGTGGAGCATTGGCAGGAGCCGTGGCCAAAACAGTCATAGCTCCTCTGGACAGAACCAAGATCATCTTCCAAGTGTCTTCACAAAGATTCTCTGCTAAGGAAGCCTTCAGACTCCTCTACTGTACATACATGAAAGATGGCTTCCTCAGTCTGTGGAGGGGCAACTCTGCCACCATGGTGCGGGTTATCCCCTACGCTGCCATCCAGTTCTGCTCCCACGACCAGTACAAGAGAATCCTGGGGGGATACTATGGCTTCCAGGGAAAAGCCCTTACTCCTTTTCCACGTTTCCTGGCAGGGTCGTTGGCTGGCACCACAGCTGCCATGCTCACCTACCCCCTGGACATGGTGCGGGCCAGGATGGCAGTGACACCCAGACAAATGTACAGCAACATTATGCACGTGTTTGTGCGCATTACGCAGGAGGAGGGCATTAAGACCCTGTACAGAGGCTTCTGCCCGACCATCCTGGGAGTGATCCCATACTCAGGAATCACCTTCTTCACATATGAGACCCTCAAGAAACTGCATGCAGAGAGGACTAGGCGGTCCCAGCCGTACTCCTACGAGCGCTTGGCATTTGGCGCGTGTGCTGGCCTACTCGGCCAGTCGGCCTCCTACCCGCTGGACGTGGTTCGCCGACGCATGCAGACGGCCGGGGTGACGGGCCAACAGTACGGCAGCGTCCTGAACACCATGAAAGCGATCGTGGTGCAGGAGGGTGTGgtgcgtggactctacaagggccTCAGTATGAACTGGATCAAAGGGCCTATCGCTGTGGGGGTCAGCTTCACCACCTTTGACCTCATGCACAACCTCCTGCACAAGATGCACCAGTTGGGATACTTCACACACTGAGCCAGCAGAGGGAGCCAGAGGAAAGGTTCACTGTTGAGACTAGAGTTGTCGTCCGTCGGTCACAGACACAATATGGATCCTCTAAGTCAGATAGGGATTGAAAGGGGAGAGTGGATActggacagacaggaggagacagaagcTGTCCATTTATTTAAGCGCACATCCTCTGACACACATTAAGCACGCACAGCCAGACCCCCCACTCTTGCTGTTGATGGATGGGATGTCTGTACTAAGGCTACAATAAGTGTCATCAAGCAGGGTAGATGTTTGATGAGTTTGCAATATGAGAGGTATGAGAATGTGAATGATTTTACATTTCCAGTCCTGATATTTGTTTGAGATTGTGGTATTATCTCTGGTAAGGGCACTTAATGGGGCTGGAGATTATCAGAGGCGAAGAACTTTACAATCGGTTCATTTTAGTATGGAATTTTATCAACTATGCTCACAATGTTTTCTGTTGCTTTAAACTGAAGATTCACTTATATTTTCAACCATGCATTGCTGCTTTTTCTTCTTGATTATTTCCGGGCTTGTTGCAGCTGTAATCCGCTGCTCTGCTCACTTCTGCATTTAGCATCAACGTCTCATGGAAGAGTCACCTAGTGGGCCTTGCTGCCAGAAAATAGTTGGTAGTTGGGGATGTAGTCTTATTCCAAAGAGCTTGTTTCTGTTTTGTGACGGTTAAAAATGTCAATTTTATGACGTGCCAAGATGGAATGTACTGTCAggaaaattattggcacccttgataaagatgagcaaataCTGTATAACAAGTACTGAGCTATAATGTATGCTCAAAAATGAGAAAAttctattttatactaatacagttgctcagagaaagagattttgtttatcaagtaatatttttttctccaaaaaagAGAGGTCAAAATTATTGCCACACTTGTTTTCAATACCTCTCCTTGCGAGGATaacgacactgagcctttttctataatgtttgatgagattggagaacacattgggagggaaattggaccattcctccatacagaggAGTGTGGTTCAAGTCTAGAAActgatggccattgcaaaatgttgatttgtgtggtcaattaactggtgtgcgtggccaaagagctcaattGTCATGTCATCTAACAAATGGAGAttgctaaacggcattggcaGTTGGTTTGGAACCtttgctatggtcagatgacactaCAATAAAGCCCTAGGCTTCCACAGAATGATGCATATGAAGAGAAAAAAACACCTACTGTTccatatggtggtggatctttgatgttattggGGCTAATTTGCTTCCACTGGttctggggcccttgttaaggtcaacggcagcATGAACTTCACCCAGTACAAGGACATTTTAGCCCAAAACCTGATTGCCTCTTCTAGGATGCTGAAacttggccacaagtggatcttccagcaagatgataaccccaagcacacatcaaaatccacaaagtaATGGCTAATTGACCACAAAAATCAACATCAGTCTCCGGACTGGTTTAAATTGAAGAGGGCAGATGAAGGATATcgaggatctggaaggattctgaaTGGAGGAATAGTCtgagatccctcccaatgtgtcaatctcataaaacattttagagaaaGGCCCTGTGGCATTCTCCTCGCAAGGTGACTTTTTAAAACTAGTGATCATTtatatccattgtttaaaaaaagtttttttgtATTGTTATATTTTGTTTATCTGAGCAATTGCATTGGTATAacattttttaatgttttattctCCATTGGACCTGACCGTCGGTGTGCAATAATGCCCTCACGTTGAtgagacagagatggtgatatcataaatagtttatttttattaacAACATGCCTGCAGTCCCTCACACACTGAATGCCATCCTCCATTTAAACAAACTGAAGCGTTTCAGGCAGGAGGCCACAGGTGTGTGCAATCAGCGTATTAGCAAGGCTCGCAAGCAGTCAGCTGACAATAAAGGGACATGTCACTCATTTGAACGTTCAAACCAACAGTTAAAGGTTGTGCTGATGAAATAAAGATGAGTTTATTGGATTTGCACGTTATAATGGATTGACAATTTAGCTAGGATCCtagatatataaatacattcattCATTTTACAGTGAAGGCTACTCCTTCACAGTCAGTAATCATTTCAGCCTGACTGCGCAGTTTCACTATCTGGTGTCTATAAATATAGATTTGTAGTGTCTAACCGGAATCTAATGGATATCATCCATATTTTCCCACTAGATGTTGCCTAAGGCATAAATATATAATCAGTATATTTCTAATATTAAGGTAGTCTTTCTATTATCTGTAGTCTTATTGTGAAGGAAATCCAGTTTGTCATAAATCTGTTTCTATGTTTATTGATACTTTACACAAGAatttctctacacccgcaataacatctgctaaatatgtgtatgtgaccaataaaattggatttgtttgaCTTGATATTGATGTCTTGAATATATTAAAATACTAAAGAACTTA

Function

NR:

description
mitochondrial coenzyme A transporter SLC25A42-like

GO: NA

KEGG:

id description
K15085 SLC25A42; solute carrier family 25, member 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603730.2 False 3683 mRNA 0.44 8 61763118 61786354
XM_021603729.2 True 3860 mRNA 0.44 8 61763118 61786542

Neighbor

gene id symbol gene type direction distance location
LOC110524249 LOC106613730 coding downstream 84012 61660149 ~ 61679106 (-)
LOC110524247 LOC106613727 coding downstream 140763 61617987 ~ 61622355 (-)
LOC110522983 LOC106613725 coding downstream 252040 61304113 ~ 61511078 (-)
trnaa-agc-3 NA coding downstream 496349 61266697 ~ 61266769 (-)
LOC110524243 LOC106613723 coding downstream 521112 61139319 ~ 61242006 (-)
tssk6 LOC106613736 coding upstream 55019 61841561 ~ 61842727 (-)
si:ch211-212d10.2 LOC106613739 coding upstream 247547 62033465 ~ 62037994 (-)
LOC110524260 LOC105011525 coding upstream 290027 62076569 ~ 62083302 (-)
cirbpb LOC106613741 coding upstream 297911 62084453 ~ 62092024 (-)
midn LOC106613743 coding upstream 430956 62217498 ~ 62251746 (-)
G424535 NA non-coding downstream 51197 61711440 ~ 61711921 (-)
G424515 NA non-coding downstream 78479 61684411 ~ 61684639 (-)
G424514 NA non-coding downstream 78960 61683903 ~ 61684158 (-)
G424512 NA non-coding downstream 82234 61680651 ~ 61680884 (-)
G424501 LOC106613729 non-coding downstream 106714 61652932 ~ 61656404 (-)
G424586 NA non-coding upstream 51207 61837749 ~ 61844260 (-)
G424620 NA non-coding upstream 67258 61853800 ~ 61878515 (-)
G424649 NA non-coding upstream 101656 61888198 ~ 61927422 (-)
G424654 NA non-coding upstream 108466 61895008 ~ 61914769 (-)
G424650 NA non-coding upstream 109934 61896476 ~ 61933735 (-)
G424502 NA other downstream 103533 61659033 ~ 61659585 (-)
G424499 LOC106613729 other downstream 111343 61649967 ~ 61651775 (-)
G424474 NA other downstream 145874 61616870 ~ 61617244 (-)
LOC110524239 LOC106573579 other downstream 691975 61058949 ~ 61081864 (-)
G422347 NA other downstream 1662062 60100765 ~ 60101056 (-)
G424678 NA other upstream 211984 61998526 ~ 62001309 (-)
LOC110524277 LOC106613757 other upstream 1017396 62803832 ~ 62808176 (-)
G425612 NA other upstream 1063462 62850004 ~ 62850247 (-)
G425647 NA other upstream 1108117 62894659 ~ 62900503 (-)

Expression


Co-expression Network