XLOC_022954 (mtfr1)


Basic Information

Item Value
gene id XLOC_022954
gene name mtfr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24726956 ~ 24733255 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045599
CTGTGGAAAAACACACGGAATACCGCTGGTCTGGATGGCATTAGCATAGCACAGCAAGGACTTATAGAAAATTGTGTTACGCTACAGTTTACACGGTTTTGATCTGAAGATGATTATTTATGACAAGCCATATCTATGACTGAAGATACTTCAATCTCAGGATGAGCAGAAACCATAGACGGATTGAAATGGACCTGGCTGTAGGTTCATCATCAAAGCATTATGGGTCATCCAGAAGTATTGTCAGAAGAATTGCCACAAATCTTCCACTGGCGCCTTGTCCTCGTGTACATTTTCAGCTTCATCCGTTCGCTTCAGGAGCGAGTTTCCTCAACAGCCCAAATGGGCCAAACGTGGCCACGCTCGCTGACGTTGCCTGGATCGACAGAGAAGAGAGCGATGGTCCTGGGAGAATCAGGTGTGAGGCAGATTCAGGTTTGGTTTTTCGCACCCAGGAACGGCGGCCCCTGAGACGTCAGCGGTCATTACCCAGCCTTCACCAGGTTGAACCTGCGCAACAGAGCCAGACTGTTATCAATGATGAAGCTATTCAGAAGATCAGCGTTCTGGAGACGGAGCTGGCCAAACTAAGAGCGCAAATCGCACAGATTGTCCAGGCACAGGAGCAAAGTGCTCAGTCCACAGGTTAGCTGCCGTGTTACTTTACTATTGTTAATA
>TCONS_00045600
GTGGAAAAACACACGGAATACCGCTGGTCTGGATGGCATTAGCATAGCACAGCAAGGACTTATAGAAAATTGTGTTACGCTACAGTTTACACGGTTTTGATCTGAAGATGATTATTTATGACAAGCCATATCTATGACTGAAGATACTTCAATCTCAGGATGAGCAGAAACCATAGACGGATTGAAATGGACCTGGCTGTAGGTTCATCATCAAAGCATTATGGGTCATCCAGAAGTATTGTCAGAAGAATTGCCACAAATCTTCCACTGGCGCCTTGTCCTCGTGTACATTTTCAGCTGTCCTGTATGTCAGGAATGCAGCATGTCTGCTTTAGCTTCATCCGTTCGCTTCAGGAGCGAGTTTCCTCAACAGCCCAAATGGGCCAAACGTGGCCACGCTCGCTGACGTTGCCTGGATCGACAGAGAAGAGAGCGATGGTCCTGGGAGAATCAGGTGTGAGGCAGATTCAGGTTTGGTTTTTCGCACCCAGGAACGGCGGCCCCTGAGACGTCAGCGGTCATTACCCAGCCTTCACCAGGTTGAACCTGCGCAACAGAGCCAGACTGTTATCAATGATGAAGCTATTCAGAAGATCAGCGTTCTGGAGACGGAGCTGGCCAAACTAAGAGCGCAAATCGCACAGATTGTCCAGGCACAGGAGCAAAGTGCTCAGTCCACAGCTCCAGCACCAGGTGGTCCTCCTGTACCTCCACCAATGGTTCCAGTTCCtcc
>TCONS_00045601
CGGAATACCGCTGGTCTGGATGGCATTAGCATAGCACAGCAAGGACTTATAGAAAATTGTGTTACGCTACAGTTTACACGGTTTTGATCTGAAGATGATTATTTATGACAAGCCATATCTATGACTGAAGATACTTCAATCTCAGGATGAGCAGAAACCATAGACGGATTGAAATGGACCTGGCTGTAGGTTCATCATCAAAGCATTATGGGTCATCCAGAAGTATTGTCAGAAGAATTGCCACAAATCTTCCACTGGCGCCTTGTCCTCGTGTACATTTTCAGCTTCATCCGTTCGCTTCAGGAGCGAGTTTCCTCAACAGCCCAAATGGGCCAAACGTGGCCACGCTCGCTGACGTTGCCTGGATCGACAGAGAAGAGAGCGATGGTCCTGGGAGAATCAGGTGTGAGGCAGATTCAGGTTTGGTTTTTCGCACCCAGGAACGGCGGCCCCTGAGACGTCAGCGGTCATTACCCAGCCTTCACCAGGTTGAACCTGCGCAACAGAGCCAGACTGTTATCAATGATGAAGCTATTCAGAAGATCAGCGTTCTGGAGACGGAGCTGGCCAAACTAAGAGCGCAAATCGCACAGATTGTCCAGGCACAGGAGCAAAGTGCTCAGTCCACAGCTCCAGCACCAGGTGGTCCTCCTGTACCTCCACCAATGGTTCCAGTTCCtcctccaccaccaccacctcctccGTGTCCCACTCCCAGCATGCAGAGAAGCTATTCCGCCATTGACCTCATTCGAGAGCGGCGTGGAAAAAAGGCTGAGCAGAACACTGTACTGGACTCGGCCCCCAAAAAGCCAGAGCTTCCCAACATGCTTGATGTGCTGAAAGATATGGGCAAAGTCAAGCTGCGCTCAGTTAAGAGCCATCAAGAGGATGGAAATGTGAAAGCCAAACCTGTTGAACCCACAGATGCAGCGGCAATGATCGCAGAAGCCCTGAAACGCAAGTTTGCTCACCGATATCGAAATGACAGCGAATGTGATGGCACTTTTACCTTCACTGCTTTTGAGAATAAACCCCATGTGGAAACACCGCTGTTTGGACAGCACATGCTGAAGTCGACTGGAAGGAGGAAAATGCATTAGGATGGAGTTACTCATCTTAATGGGTAAAAACCTGACGACTCTTCATTTTGAAACACCGGCTAACTTTTTCTGTTAGCTCTTAAAATAATGTTTGTGAACATGCCAAACGCTACACTGTCGATCTGGTTTCTCAATTGAACATCTttgtattttttgcactttaaatAGTACAATACCAGTACATCTCGTACCACAGCCAGTTCCATCATTAACGCCAGTTCCATAATTGTTGGGTTTTATGATATTATGTTTGTGGTTTTAGTTGGATTTAAGCTCAAAAGTGCAGGTATTTGACCCTCTTTTCTGAAGGGATGATGCTGAACGAGAGCACCAGAGTTTTAAATCAGtcattttgtgtgtattttaacACTTGTTTGTACGATTCATAGCTGCTGgaaaatcactttattttaacatcagCCTTTTTATAATGTTGTGAACATAAATAGTGCATAGATGGTGCTTTCAGTGGTATTTGCTGACTACTGTCGAGAGCTAatttaaaaagcctttttttaggttgtaatttattatttggcAACATTTCTATTATGTGGTTTAAACCCGTTTAGCAAATCACTTGAATAATGTAGTTTTGTGTCATTTGAAATACTATCTAACATATTTAAGGCTGCTAAAGTCTGttgttttttaaagggatagttcacccaaaattgaaaatatgCTGTTTAAATCATTTAGTCTCAGGCTGTAGGCAAATTGGTTTcttcagtaaaacattaaatatgatttttagctgaaaatgaggtcgcAGGTCATTGTCTACCAAAACTTGAGTCAAAAAGCATATAGAGGGAAAACCAAACTGTGGCTCCTGATTCATTTATGAGACTGCATAAGTGATGGATCctgcattttataaatcaccaagCCCATTGATTTCAGCTAATAGTCATTTTTATCGTTCTACTAAAGAAAATAAGTCACAAGGCTAACTGTGTTAAAAGcaatttctttttgttgttgttgcttgtgAACTTTCTGTTGATGGTGTGACAGTGTTTGTACCTTTTAAAGGTTTGTTCTTTTGCACATTGTGCAGCAGAAGCATTATATTGCAATATAGGATTTCTCATTTCAACAGTGTATACTGGAACTAATGGCCAGCATGTAGAAGCATTACCTCAGAATAAAAGGTACACTACCGGTCAAggttggggtcagtttttttttttttttttttttaagaaaattattctgttcatcaacatggcatttattaaacattaaatttgttcattttaaataactgcttattgtatacactttcaaatgaaaatataactccagtcattattgctattatcaataataataagtattattagaGTAATTTCGGAAGGATTGTGTGACTCTAAagctgaaaatatatctttaaaatgactggaataaatgattaaattatctaaactacttttaaacagtaactttatagtgcaataacactTCACAATTTTACAAGTTGTATTTTTGCTGAAATTATTGCAGCTTGGGTGAGCAAGCTAAGtttatttcaaaacattaaaatatcataCTGTCCCCAAAATTGACCAGTAGTGTAATTTTTTTGTATCTCATGAATAGATTTGTTTTGtattaaattatgattaaaatgGGCTGATTTCATTACACTACAGAACCGTTGAATGGACTTTTAATTTGTTGAATAAACCAACTAGTGTAACGAA
>TCONS_00045602
GGCATTAGCATAGCACAGCAAGGACTTATAGAAAATTGTGTTACGCTACAGTTTACACGGTTTTGATCTGAAGATGATTATTTATGACAAGCCATATCTATGACTGAAGATACTTCAATCTCAGGATGAGCAGAAACCATAGACGGATTGAAATGGACCTGGCTGTAGGTTCATCATCAAAGCATTATGGGTCATCCAGAAGTATTGTCAGAAGAATTGCCACAAATCTTCCACTGGCGCCTTGTCCTCGTGTACATTTTCAGTGTGCTGACCATAAACACTCATGAATCACGGGATGGGTTTCAGCTCCTGTCCTGTATGTCAGGAATGCAGCATGTCTGCTTTAGCTTCATCCGTTCGCTTCAGGAGCGAGTTTCCTCAACAGCCCAAATGGGCCAAACGTGGCCACGCTCGCTGACGTTGCCTGGATCGACAGAGAAGAGAGCGATGGTCCTGGGAGAATCAGGTGTGAGGCAGATTCAGGTTTGGTTTTTCGCACCCAGGAACGGCGGCCCCTGAGACGTCAGCGGTCATTACCCAGCCTTCACCAGGTTGAACCTGCGCAACAGAGCCAGACTGTTATCAATGATGAAGCTATTCAGAAGATCAGCGTTCTGGAGACGGAGCTGGCCAAACTAAGAGCGCAAATCGCACAGATTGTCCAGGCACAGGAGCAAAGTGCTCAGTCCACAGCTCCAGCACCAGGTGGTCCTCCTGTACCTCCACCAATGGTTCCAGTTCCtcc

Function

symbol description
mtfr1 Predicted to be involved in aerobic respiration and mitochondrial fission. Predicted to be active in mitochondrion. Is expressed in adaxial cell; somite; and ventral mesoderm. Orthologous to human MTFR1 (mitochondrial fission regulator 1).

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0000266 mitochondrial fission biological_process
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-86 Predicted to be involved in aerobic respiration and mitochondrial fission. Predicted to be active in mitochondrion. Is expressed in adaxial cell; somite; and ventral mesoderm. Orthologous to human MTFR1 (mitochondrial fission regulator 1).

Ensembl:

ensembl_id ENSDARG00000045304

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045599 False 678 mRNA 0.48 5 24726956 24729124
TCONS_00045600 False 733 processed_transcript 0.50 7 24726958 24730970
TCONS_00045601 False 2812 mRNA 0.39 8 24726971 24733255
TCONS_00045602 True 745 lncRNA 0.49 8 24726992 24730970

Neighbor

gene id symbol gene type direction distance location
XLOC_022953 bhlhe22 coding upstream 263610 24461341 ~ 24463346 (+)
XLOC_022952 NA coding upstream 268510 24453041 ~ 24458446 (+)
XLOC_022951 ythdf3 coding upstream 426606 24285751 ~ 24300350 (+)
XLOC_022950 NA coding upstream 515615 24203606 ~ 24211341 (+)
XLOC_022949 si:dkey-226l10.6 coding upstream 549315 24170914 ~ 24177641 (+)
XLOC_022955 dnajc5b coding downstream 75700 24808955 ~ 24824899 (+)
XLOC_022956 trim55b coding downstream 98472 24831727 ~ 24846603 (+)
XLOC_022957 pcyt1ba coding downstream 189911 24923166 ~ 24935849 (+)
XLOC_022958 NA coding downstream 205502 24938757 ~ 24942201 (+)
XLOC_022959 CR383672.1 coding downstream 249880 24983135 ~ 24993102 (+)
XLOC_022945 NA non-coding upstream 741121 23982487 ~ 23985835 (+)
XLOC_022943 NA non-coding upstream 790068 23935071 ~ 23936888 (+)
XLOC_022940 NA non-coding upstream 979445 23744369 ~ 23747511 (+)
XLOC_022962 NA non-coding downstream 351883 25085138 ~ 25087075 (+)
XLOC_022963 NA non-coding downstream 410920 25144175 ~ 25184614 (+)
XLOC_022966 NA non-coding downstream 502951 25236206 ~ 25237572 (+)

Expression


Co-expression Network