Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524524 |
| gene name | LOC100194696 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 73174706 ~ 73180889 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| proteasome subunit beta type-5-like |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02737 | PSMB5; 20S proteasome subunit beta 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021604253.2 | True | 1279 | mRNA | 0.49 | 3 | 73174706 | 73180889 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110524523 | LOC106560237 | coding | downstream | 11275 | 73132102 ~ 73163431 (-) |
| LOC110524520 | LOC106560236 | coding | downstream | 64803 | 73106039 ~ 73109903 (-) |
| LOC110524518 | LOC106560233 | coding | downstream | 112292 | 73051611 ~ 73062414 (-) |
| LOC110524517 | LOC106560232 | coding | downstream | 164305 | 73005255 ~ 73010401 (-) |
| LOC110524515 | LOC106560227 | coding | downstream | 308438 | 72852068 ~ 72866268 (-) |
| LOC110522885 | LOC106560352 | coding | upstream | 7136 | 73188025 ~ 73188938 (-) |
| LOC100135942 | LOC106560239 | coding | upstream | 26971 | 73207860 ~ 73218158 (-) |
| LOC110524526 | LOC106584218 | coding | upstream | 189550 | 73370439 ~ 73421683 (-) |
| LOC110524527 | LOC106560250 | coding | upstream | 250674 | 73431563 ~ 73444514 (-) |
| LOC110524532 | LOC106560246 | coding | upstream | 376484 | 73557373 ~ 73574822 (-) |
| G437075 | NA | non-coding | downstream | 48342 | 73125420 ~ 73126364 (-) |
| G437073 | LOC106567308 | non-coding | downstream | 52679 | 73121401 ~ 73122027 (-) |
| G437069 | NA | non-coding | downstream | 59854 | 73114613 ~ 73114852 (-) |
| G437067 | NA | non-coding | downstream | 60977 | 73113458 ~ 73113729 (-) |
| G437318 | NA | non-coding | upstream | 259355 | 73440244 ~ 73440536 (-) |
| G437660 | LOC106560248 | non-coding | upstream | 305778 | 73486667 ~ 73488455 (-) |
| G437680 | cc2d2a | non-coding | upstream | 350719 | 73531608 ~ 73532196 (-) |
| G437705 | NA | non-coding | upstream | 413205 | 73594094 ~ 73594489 (-) |
| G437703 | NA | non-coding | upstream | 416488 | 73597377 ~ 73598010 (-) |
| G437079 | NA | other | downstream | 27578 | 73146358 ~ 73147128 (-) |
| G437074 | NA | other | downstream | 49668 | 73122112 ~ 73125038 (-) |
| G437054 | NA | other | downstream | 79370 | 73094794 ~ 73095336 (-) |
| G436873 | NA | other | downstream | 398838 | 72774561 ~ 72775868 (-) |
| G436847 | NA | other | downstream | 501880 | 72672154 ~ 72672826 (-) |
| G439002 | NA | other | upstream | 1684370 | 74865259 ~ 74927797 (-) |
| LOC110523004 | NA | other | upstream | 1782571 | 74961377 ~ 74968484 (-) |
| G439594 | NA | other | upstream | 2082584 | 75263473 ~ 75265403 (-) |
| G439788 | LOC106560295 | other | upstream | 2390360 | 75571249 ~ 75575569 (-) |
