LOC110524583 (LOC106560299)


Basic Information

Item Value
gene id LOC110524583
gene name LOC106560299
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76288921 ~ 76324868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978427.1
AGTCGCCGTTGCCCCTGACACCAGAGTTCATCCGTAACATCCGTCTCCTGGGTCGGAGACCCACCACCCAActcatcactgacaacctgatcaGGAAGTATGGGACACACTTCCTGCTGTCGGCCACGCTGGGAGTGCTTTTGATAGTCATGTGGACAACGCCGTGAGGGTGGTTGCTCTTTACAGGAGAGACGCTTATTTCAGCTACAAAGCCCTGTGCATGTCGAGGAAACCAAGGGAATGGGTTTCCTGTTGGAAAGCAACACTTGTCGATTACCTCAGCCGGGCTCCTGGAAAGGTCGTAGTTGGGAAGAGGCCTTAACGATATTTGTGGACAAGAGAAAGCTGAGTAAGAAGGCGGATGTGAGCGAATACTCTGGCTCTGGCAACTCGTCCAGCGTAACTCTGGAGGCTCTGCACCAGCTGGCTGCCTCCTACTtcatagacagagagagcacCCTGCGCAAGCTGCACCACATCCAGATAGCATCCACAGCCATTaagGTAACAGAGACCCGGACAGGCCCTCTCGGATGCAGTAACTATGACAACCTTGATTCTGTCAGCTCTGTTCTGGTTCAGAGTCCGGAAAACAAAGTCCACTTGCAAGgccTGCAGGTTATCCTGCCAGACTACCTGAGGGACAGTTTTGTCCAGGCTGCTCTAAGCTACATTGCCTGTAATGGGGAGGGGGGCTTCGTCTGTAAGGACAATGACTGCTGGTGCAAGTGTGACACCAAGTTCCCAGAATGCAACTGTCCCTACATGGACATCCAAGCCATGGAGGACAGTCTACAGAGGATCACTGAGACCTGGGGGACACTCTATAAGGAGTTTGAGGATTCAGATGAGTTCAAGACCTTCCTTATGAGGCTCCCGCAGAACTTCTTCCTGAATGTGTCGACTATCCAGCACCTTTGGTCGTTGGATGGCGTGTTCCAGTGGCGCTATGAGCAGCTGGAGAACAGCATGAGTGTGCTCTTCAGACGAGCCCAGAGAGTGGTGTTCAAGCTCTTCAGCCTCAGCAAGAGGTGCCAGAGGCAGCCTCACATCCGCCTACCCAGAGAATGGCCCCAATCCTACTGGCTGATACACTTCCAGTCTCTCCTCTACTGTTCTGAGAACAACCAGCTGGGTTCCTTCTCTGAGGAGCTCCACAGCTGTACCTGCAGCTACGAGCACAGCCCTTGCCAGCTGCCCCCACCATGTGCCATCGGAGAGGGTCCCGCCTGCGCAGCCTGTGCCCCAGACAACCACACACGATGTGGGAGCTGCAACCCTGGCTACGCCCTAACACAGGGGGCCTGCAGACCCATGGTGGCTGACTCAACAGAGAACTACCTGGGCTttgagacagacctacaggacCTGGAGCTGAGATACCTCCTGCAGAGGGCCGACCGTAGGCTGGAGGTCCATGCCATCTTCATCAGCAATGACATGCGCCTGAACAGCTGGTTTGACCCATCCTGGAGGAAGAGGATGCTGCTGACGCTGAAAAGCAACAAGTACAAGTCCAACCTGGTCCACATGCTGCTGGGCGTGTCTCTCCAGATCTGCCTGACCAAGAACAGCACACTGGAGCCCGTCCTCACCCTCTACATCAACCCCTTCGGAGGCAGCCACTCTGAGAGCTGGTACATTCCAGTCAGTGAGAACAGCTTCCCAGACTGGACGGCCACCAAACTGGATCTACCCCTGGAGTGCTTCAACTGGACCCTGACACTGGGCAACAAGTGGAAGACCTTCTTTGAGACCATCCACATCTACCTGCGGAGCCGGATAAAGATGCAGGGCGCTGGAGGTCCGGCGGGGGCTATGAACGACAGCCTCTACTATGAGCCATTAGAAATGGTTGACCCTTCACGGAACCTGGGCTACATGAAGATCAACAGCATCCAAGTATTTGGCTACAGCATGCACTTTGACCCGGAAGCAATCCATGACCTGATCTTGCAGCTGGACTACCCATACACCCAGGGGTCCCAGGACACGGCTCTGCTGCAGCTACTGGAGATCAGGGACCGGGTCAACAGACTGTCCCCCCCAGGTCAGCAGAGACTAGACCTGTTCGCATGTCTGCTAAGACACCGGCTCAAACTGACAGCCAGTGAGGTGGTCCGCATACACGCCTCCCTGCAGGCCTTCAGCAACCGCCTGCCAAACTCTCTGGATTACGAGACCACCAAGCTGTGTAGTTAACAGCTACTATGGAATGACTGGGAGACGTTAAAGCTCAACGGCTACAAGGGGAACTATTGGACGGCTAAATGGTATACTGCTACAGTAGTTTGACTTTCAATGGTTTGTTGATTCTCTGGATTACAAGACCTTAAATGTATGTACTTAACTGTTACAGAGACACAATAAGGACATGTGAATTGTGTCTTTTGGCTTTCAGTTGGGTTGTGACTCAATGTCTTGTAAATGGTTGAGAGATGCTGGAAGCTGGTGCTTTTTTGTCCACAGAAGACACACAAAAACTCTGACACCATAAACAAAAACAGATCTAGAAAATCAGATATGTAACTCTCTCCACATCCACTTCACCATCTTGTTTAAATACAACCCTGCTCATTTATACAGTGTATACTGAAGCCAACTGGAGGGACCTTTTAAGATACATGTTACAGTCTGTTTGTTTGTAACTCTTTTATATGTTATTTTGCTTCAGTGACAGTGCACTTCCCATAACAACCAGAATACAGTGGTATCAGTCAGATTTGTAGATAACttgttattaaaacatgaattaaCAACT
>XM_021604384.2
GTGAACAacctggctgtggagaggagagacttCCTGGAGTCGCCGTTGCCCCTGACACCAGAGTTCATCCGTAACATCCGTCTCCTGGGTCGGAGACCCACCACCCAActcatcactgacaacctgatcaGGAAGTATGGGACACACTTCCTGCTGTCGGCCACGCTGGGAGGAGAGACGCTTATTTCAGCTACAAAGCCCTGTGCATGTCGAGGAAACCAAGGGAATGGGTTTCCTGTTGGAAAGCAACACTTGTCGATTACCTCAGCCGGGCTCCTGGAAAGGTCGTAGTTGGGAAGAGGCCTTAACGATATTTGTGGACAAGAGAAAGCTGAGTAAGAAGGCGGATGTGAGCGAATACTCTGGCTCTGGCAACTCGTCCAGCGTAACTCTGGAGGCTCTGCACCAGCTGGCTGCCTCCTACTtcatagacagagagagcacCCTGCGCAAGCTGCACCACATCCAGATAGCATCCACAGCCATTaagGTAACAGAGACCCGGACAGGCCCTCTCGGATGCAGTAACTATGACAACCTTGATTCTGTCAGCTCTGTTCTGGTTCAGAGTCCGGAAAACAAAGTCCACTTGCAAGgccTGCAGGTTATCCTGCCAGACTACCTGAGGGACAGTTTTGTCCAGGCTGCTCTAAGCTACATTGCCTGTAATGGGGAGGGGGGCTTCGTCTGTAAGGACAATGACTGCTGGTGCAAGTGTGACACCAAGTTCCCAGAATGCAACTGTCCCTACATGGACATCCAAGCCATGGAGGACAGTCTACAGAGGATCACTGAGACCTGGGGGACACTCTATAAGGAGTTTGAGGATTCAGATGAGTTCAAGACCTTCCTTATGAGGCTCCCGCAGAACTTCTTCCTGAATGTGTCGACTATCCAGCACCTTTGGTCGTTGGATGGCGTGTTCCAGTGGCGCTATGAGCAGCTGGAGAACAGCATGAGTGTGCTCTTCAGACGAGCCCAGAGAGTGGTGTTCAAGCTCTTCAGCCTCAGCAAGAGGTGCCAGAGGCAGCCTCACATCCGCCTACCCAGAGAATGGCCCCAATCCTACTGGCTGATACACTTCCAGTCTCTCCTCTACTGTTCTGAGAACAACCAGCTGGGTTCCTTCTCTGAGGAGCTCCACAGCTGTACCTGCAGCTACGAGCACAGCCCTTGCCAGCTGCCCCCACCATGTGCCATCGGAGAGGGTCCCGCCTGCGCAGCCTGTGCCCCAGACAACCACACACGATGTGGGAGCTGCAACCCTGGCTACGCCCTAACACAGGGGGCCTGCAGACCCATGGTGGCTGACTCAACAGAGAACTACCTGGGCTttgagacagacctacaggacCTGGAGCTGAGATACCTCCTGCAGAGGGCCGACCGTAGGCTGGAGGTCCATGCCATCTTCATCAGCAATGACATGCGCCTGAACAGCTGGTTTGACCCATCCTGGAGGAAGAGGATGCTGCTGACGCTGAAAAGCAACAAGTACAAGTCCAACCTGGTCCACATGCTGCTGGGCGTGTCTCTCCAGATCTGCCTGACCAAGAACAGCACACTGGAGCCCGTCCTCACCCTCTACATCAACCCCTTCGGAGGCAGCCACTCTGAGAGCTGGTACATTCCAGTCAGTGAGAACAGCTTCCCAGACTGGACGGCCACCAAACTGGATCTACCCCTGGAGTGCTTCAACTGGACCCTGACACTGGGCAACAAGTGGAAGACCTTCTTTGAGACCATCCACATCTACCTGCGGAGCCGGATAAAGATGCAGGGCGCTGGAGGTCCGGCGGGGGCTATGAACGACAGCCTCTACTATGAGCCATTAGAAATGGTTGACCCTTCACGGAACCTGGGCTACATGAAGATCAACAGCATCCAAGTATTTGGCTACAGCATGCACTTTGACCCGGAAGCAATCCATGACCTGATCTTGCAGCTGGACTACCCATACACCCAGGGGTCCCAGGACACGGCTCTGCTGCAGCTACTGGAGATCAGGGACCGGGTCAACAGACTGTCCCCCCCAGGTCAGCAGAGACTAGACCTGTTCGCATGTCTGCTAAGACACCGGCTCAAACTGACAGCCAGTGAGGTGGTCCGCATACACGCCTCCCTGCAGGCCTTCAGCAACCGCCTGCCAAACTCTCTGGATTACGAGACCACCAAGCTGTGTAGTTAACAGCTACTATGGAATGACTGGGAGACGTTAAAGCTCAACGGCTACAAGGGGAACTATTGGACGGCTAAATGGTATACTGCTACAGTAGTTTGACTTTCAATGGTTTGTTGATTCTCTGGATTACAAGACCTTAAATGTATGTACTTAACTGTTACAGAGACACAATAAGGACATGTGAATTGTGTCTTTTGGCTTTCAGTTGGGTTGTGACTCAATGTCTTGTAAATGGTTGAGAGATGCTGGAAGCTGGTGCTTTTTTGTCCACAGAAGACACACAAAAACTCTGACACCATAAACAAAAACAGATCTAGAAAATCAGATATGTAACTCTCTCCACATCCACTTCACCATCTTGTTTAAATACAACCCTGCTCATTTATACAGTGTATACTGAAGCCAACTGGAGGGACCTTTTAAGATACATGTTACAGTCTGTTTGTTTGTAACTCTTTTATATGTTATTTTGCTTCAGTGACAGTGCACTTCCCATAACAACCAGAATACAGTGGTATCAGTCAGATTTGTAGATAACttgttattaaaacatgaattaaCAACT
>XM_036978426.1
cctccctccacccctacctccttccacccctcccttccttcctccctccacccctacctccctccacccctccctcactccctccctccttcccttgcCCCCTCAATCTCTGATGGCTCTATGGGGCTTCCTCAGTGTCAGCCTGCACTGCTGGGTCTGGCTCTGGGCCGGGGCCCCTATCTCGACCAGCTTGCCCCACGACCGCCCCGGAGGGCCCCTGGACTGGCTGCTGTCCGACAAGGGCCCCTTCCACCACTCCCAGGAGTACACAGACTTCGTTGAGAGGAACCGGCAGGGCTTCTCCACCCGCTACAAGATATACCGAGAGTTTGGGAGATGGAAGGTGAACAacctggctgtggagaggagagacttCCTGGAGTCGCCGTTGCCCCTGACACCAGAGTTCATCCGTAACATCCGTCTCCTGGGTCGGAGACCCACCACCCAActcatcactgacaacctgatcaGGAAGTATGGGACACACTTCCTGCTGTCGGCCACGCTGGGAGGGGAAGAGGCCTTAACGATATTTGTGGACAAGAGAAAGCTGAGTAAGAAGGCGGATGTGAGCGAATACTCTGGCTCTGGCAACTCGTCCAGCGTAACTCTGGAGGCTCTGCACCAGCTGGCTGCCTCCTACTtcatagacagagagagcacCCTGCGCAAGCTGCACCACATCCAGATAGCATCCACAGCCATTaagGTAACAGAGACCCGGACAGGCCCTCTCGGATGCAGTAACTATGACAACCTTGATTCTGTCAGCTCTGTTCTGGTTCAGAGTCCGGAAAACAAAGTCCACTTGCAAGgccTGCAGGTTATCCTGCCAGACTACCTGAGGGACAGTTTTGTCCAGGCTGCTCTAAGCTACATTGCCTGTAATGGGGAGGGGGGCTTCGTCTGTAAGGACAATGACTGCTGGTGCAAGTGTGACACCAAGTTCCCAGAATGCAACTGTCCCTACATGGACATCCAAGCCATGGAGGACAGTCTACAGAGGATCACTGAGACCTGGGGGACACTCTATAAGGAGTTTGAGGATTCAGATGAGTTCAAGACCTTCCTTATGAGGCTCCCGCAGAACTTCTTCCTGAATGTGTCGACTATCCAGCACCTTTGGTCGTTGGATGGCGTGTTCCAGTGGCGCTATGAGCAGCTGGAGAACAGCATGAGTGTGCTCTTCAGACGAGCCCAGAGAGTGGTGTTCAAGCTCTTCAGCCTCAGCAAGAGGTGCCAGAGGCAGCCTCACATCCGCCTACCCAGAGAATGGCCCCAATCCTACTGGCTGATACACTTCCAGTCTCTCCTCTACTGTTCTGAGAACAACCAGCTGGGTTCCTTCTCTGAGGAGCTCCACAGCTGTACCTGCAGCTACGAGCACAGCCCTTGCCAGCTGCCCCCACCATGTGCCATCGGAGAGGGTCCCGCCTGCGCAGCCTGTGCCCCAGACAACCACACACGATGTGGGAGCTGCAACCCTGGCTACGCCCTAACACAGGGGGCCTGCAGACCCATGGTGGCTGACTCAACAGAGAACTACCTGGGCTttgagacagacctacaggacCTGGAGCTGAGATACCTCCTGCAGAGGGCCGACCGTAGGCTGGAGGTCCATGCCATCTTCATCAGCAATGACATGCGCCTGAACAGCTGGTTTGACCCATCCTGGAGGAAGAGGATGCTGCTGACGCTGAAAAGCAACAAGTACAAGTCCAACCTGGTCCACATGCTGCTGGGCGTGTCTCTCCAGATCTGCCTGACCAAGAACAGCACACTGGAGCCCGTCCTCACCCTCTACATCAACCCCTTCGGAGGCAGCCACTCTGAGAGCTGGTACATTCCAGTCAGTGAGAACAGCTTCCCAGACTGGACGGCCACCAAACTGGATCTACCCCTGGAGTGCTTCAACTGGACCCTGACACTGGGCAACAAGTGGAAGACCTTCTTTGAGACCATCCACATCTACCTGCGGAGCCGGATAAAGATGCAGGGCGCTGGAGGTCCGGCGGGGGCTATGAACGACAGCCTCTACTATGAGCCATTAGAAATGGTTGACCCTTCACGGAACCTGGGCTACATGAAGATCAACAGCATCCAAGTATTTGGCTACAGCATGCACTTTGACCCGGAAGCAATCCATGACCTGATCTTGCAGCTGGACTACCCATACACCCAGGGGTCCCAGGACACGGCTCTGCTGCAGCTACTGGAGATCAGGGACCGGGTCAACAGACTGTCCCCCCCAGGTCAGCAGAGACTAGACCTGTTCGCATGTCTGCTAAGACACCGGCTCAAACTGACAGCCAGTGAGGTGGTCCGCATACACGCCTCCCTGCAGGCCTTCAGCAACCGCCTGCCAAACTCTCTGGATTACGAGACCACCAAGCTGTGTAGTTAACAGCTACTATGGAATGACTGGGAGACGTTAAAGCTCAACGGCTACAAGGGGAACTATTGGACGGCTAAATGGTATACTGCTACAGTAGTTTGACTTTCAATGGTTTGTTGATTCTCTGGATTACAAGACCTTAAATGTATGTACTTAACTGTTACAGAGACACAATAAGGACATGTGAATTGTGTCTTTTGGCTTTCAGTTGGGTTGTGACTCAATGTCTTGTAAATGGTTGAGAGATGCTGGAAGCTGGTGCTTTTTTGTCCACAGAAGACACACAAAAACTCTGACACCATAAACAAAAACAGATCTAGAAAATCAGATATGTAACTCTCTCCACATCCACTTCACCATCTTGTTTAAATACAACCCTGCTCATTTATACAGTGTATACTGAAGCCAACTGGAGGGACCTTTTAAGATACATGTTACAGTCTGTTTGTTTGTAACTCTTTTATATGTTATTTTGCTTCAGTGACAGTGCACTTCCCATAACAACCAGAATACAGTGGTATCAGTCAGATTTGTAGATAACttgttattaaaacatgaattaaCAACT

Function

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978427.1 False 2761 mRNA 0.52 8 76288921 76318618
XM_021604384.2 False 2747 mRNA 0.52 8 76288921 76318655
XM_036978426.1 True 2969 mRNA 0.53 8 76288921 76324868

Neighbor

gene id symbol gene type direction distance location
LOC110524582 LOC106560298 coding downstream 334432 75882229 ~ 75954489 (-)
LOC110523006 LOC106560358 coding downstream 545212 75740110 ~ 75743709 (-)
rgs8 LOC106560297 coding downstream 582455 75671713 ~ 75706466 (-)
LOC110524580 rgs16 coding downstream 628249 75658532 ~ 75660672 (-)
LOC110524579 LOC106560296 coding downstream 664454 75613590 ~ 75624467 (-)
LOC110524587 uchl5 coding upstream 253375 76578243 ~ 76586678 (-)
glrx2 glrx2 coding upstream 262137 76587005 ~ 76588980 (-)
LOC110524596 barhl2 coding upstream 667123 76991991 ~ 76996276 (-)
LOC110524597 LOC106560308 coding upstream 857046 77181914 ~ 77215911 (-)
LOC110524600 tgfbr3 coding upstream 952037 77276905 ~ 77402910 (-)
G440427 NA non-coding downstream 408967 75879642 ~ 75879954 (-)
G440081 NA non-coding downstream 428078 75860620 ~ 75860843 (-)
G440043 NA non-coding downstream 451945 75836775 ~ 75836976 (-)
G440040 NA non-coding downstream 453417 75835263 ~ 75835504 (-)
G439931 NA non-coding downstream 526893 75761772 ~ 75762028 (-)
G440430 NA non-coding upstream 52 76324920 ~ 76342414 (-)
G440899 NA non-coding upstream 106231 76431099 ~ 76431450 (-)
G440950 NA non-coding upstream 143844 76468712 ~ 76468961 (-)
G440965 NA non-coding upstream 153956 76478824 ~ 76479026 (-)
G441179 LOC106560300 non-coding upstream 238837 76563705 ~ 76566462 (-)
G439788 LOC106560295 other downstream 713352 75571249 ~ 75575569 (-)
G439594 NA other downstream 1023518 75263473 ~ 75265403 (-)
LOC110523004 NA other downstream 1325225 74961377 ~ 74968484 (-)
G439002 NA other downstream 1361124 74865259 ~ 74927797 (-)
LOC110524526 LOC106584218 other downstream 2878582 73370439 ~ 73421683 (-)
G441168 glrx2 other upstream 261590 76586458 ~ 76590370 (-)
G441483 NA other upstream 577514 76902382 ~ 76902771 (-)
G441630 NA other upstream 689131 77013999 ~ 77021375 (-)
G442115 NA other upstream 1081874 77406742 ~ 77407135 (-)
G442381 rpl5 other upstream 1298431 77623299 ~ 77627214 (-)

Expression


Co-expression Network