LOC110524651 (LOC106560379)


Basic Information

Item Value
gene id LOC110524651
gene name LOC106560379
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80796999 ~ 80806535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978530.1
CGGGACTCGCCAAAATACTTTCGTCATCGCCCTAACCATCTCATTTGGACTGGAATCCGGTCATGGAAGCTTCTGACTTCATAGCTAGCTAGAAGAAGAATCAAGCTCTGGAGTAACTGATGGGAGATAACATGGTGGATCAGAGCAGTCCTATGCGGGTGTTGGTGACTGGGGGGACTGGTCTGGTGGGCAGGGCCATAGAACATGTGGTCAAAGAAGAGGGAGGAGCgcgggagggagaggagtggatcTTCCTCTCCTCTAAGGATGCAAATCTCATGGACATGGGTGAGACGCAGGCAGTGTTTTTGAAGCACCAGCCCACCCACGTCATCCACCTGGCAGCCATGGTGGGAGGGCTCTTCAAGAACATGAGGGCCAACCTAGACTTCTGGAGGAACAACATCTACATCAATGACAACGTCCTGCAGGCAGCCCACGAGGTGGATGCTGTCAGGGtggtctcctgtctctccacctgcATTTTCCCTGATAAGACCACCTATCCCATCAATGAGACCatgATCCACAACGGCCCTCCTCACGAGTCTAACTTTGGCTACTCCTATGCTAAGAGAATGATCGATATCCACAATagGGCGTATCACCAGCAGCGTGGGCGATGCTACACAGCAGTGATACCGACCAATGTGTTTGGCCCTCATGATAACTTCAACATCGAGGATGGACATGTACTTCCAGGCCTCATACACAAAGCATACATTGCTCAGAaggagGGTAGTCCATTGGTGGTGTGGGGCTCAGGAACTCCCAGAAGGCAGTTCATCTACTCATTGGATCTGGCTCGTCTCTTCCTCTGGGTGCTGAGAGAGTACCCTGAGGTGGATCCCATCATACTGTCTGttggtgaggaggaggaggtgtccaTTAAGGAGGCAGCAGAGGGCGTTGTCGAAGCACTGGGGTTCAAAGGTCAAGTGACTTATGACAGAACTAAAGCAGACGGTCAGTTCAAGAAGACAGCCAGCAACGCCAAGCTGCTGCGGTACTGCCCCAACTTCACCTTTACCCCCTTCAAACAAGccttgaaGGAGACATGTGATTGGTTCGTGGCCAATTACGACACCGCCCGCAAGTGAAGATTCCTCAAAACAGATTGGCTGTTAGGAAACCAGTCCTAGGAAGGAAGGAGCAGGAATAGGGGACTGTGATGGAGGGGTCAGGAGGAGTGGAGCTGAAGGTTCTAGAACTGACAAAGAACTTAGGACTTAGAGCGTACATGAAGAACATTATCTGCCATTAAATGAAGTCCTGTTAGACTGATGTAATGTGGTCCTGATCATGTTGCTGAGATTCCATGAAGAATGTGTAGAGTGTAGGCTGGGCTAATCGCTCTGTTTTAACACTCAAACAGCATCCTGTTCCTATATCAGTTGTACTCAAACTATTTGAGAAGGTGGCAAAGGTCTGGATGGCTATTGTAATTTATCGGCGTAATAATGAATCCTCAACCCATTCgaccccaaactgttcacaccccttttGTTGGCAGAGAAAAATtaatgttttaaagctaatttcctgcaattctacacattttccatGTCTTATTTGTTGATATACCAGGAGTTGAATCCTGACTGTATTGACCCCATTCTGAGTCTAGATCCAGCCTACGGTCCAACTGTTGAGTATGGctgccctatatagtacactacttttgaccagagatctATGGCACTATGTaggacagggatgggcaactccagtccttgagggcctgattggtgaaaCACTTTTCGCCCATCCCTAGccaacacagctgatttaaactaATTACATtcaactgaagatcatgattagttgattattggagtcaggtgtgttagctggggctggggaaaaACTgacacaccaatcaggccctcagGGACTGGAATTACCCACCTCTGATGTAAGATGTGTCCCAAATAGTACCCTACTTCCTATCTTGTCTGGAGTGACCAGCAGGACTCCTATCTCCTCTATAACCATGTCTATACCATATGACTAGAGTGGGTATAATGGACTTAAACTAGTTATTTGTCCATAGGATTCCCTCTATGTCCACCCAATATGGCAACAAAATAGAATTTTCCACAAATAAATCATTGTGCTGCCATTTTGAGTGGGTTGTTCACTACTCAATTTGTCTGCTGTATCATATAGAATACCAGGAGGAGTGGAGCTGAAGGTTCTAGAACTGACAAAGAACTTAGGACTTAGAGCGTACATGAAGAACATTATCTGCCATTAAATGAAGTCCTGTTAGACTGATGTAATGTGGTCCTGATCATGTTGCTGAGATTCCATGAAGAATGTGTAGAGTGTAGGCTGGGCTAATCGCTCTGTTTTAACACTCAAACAGCATCCTGTTCCTATATCAGTTGTACTCAAACTATTTGAGAAGGTGGCAAAGGTCTGGATGGCTATTGTAATTTATCGGCGTAATAATGAATCCTCAACCCATTCgaccccaaactgttcacaccccttttGTTGGCAGAGAAAAATtaatgttttaaagctaatttcctgcaattctacacattttccatGTCTTATTTGTTGATATACCAGGAGTTGAATCCTGACTGTATTGACCCCATTCTGAGTCTAGATCCAGCCTACGGTCCAACTGTTGAGTATGGctgccctatatagtacactacttttgaccagagatctATGGCACTATGTaggacagggatgggcaactccagtccttgagggcctgattggtgaaaCACTTTTCGCCCATCCCTAGccaacacagctgatttaaactaATTACATtcaactgaagatcatgattagttgattattggagtcaggtgtgttagctggggctggggaaaaACTgacacaccaatcaggccctcagGGACTGGAATTACCCACCTCTGATGTAAGATGTGTCCCAAATAGTACCCTACTTCCTATCTTGTCTGGAGTGACCAGCAGGACTCCTATCTCCTCTATAACCATGTCTATACCATATGACTAGAGTGGGTATAATGGACTTAAACTAGTTATTTGTCCATAGGATTCCCTCTATGTCCACCCAATATGGCAACAAAATAGAATTTTCCACAAATAAATCATTGTGCTGCCATTTTGAGTGGGTTGTTCACTACTCAATTTGTCTGCTGTATCATATAGAATACCAGGTAGTTTTGGATATGTTCTTTTATAACTTTCTTCACAAAATACAACTGTGCAATATGTACATGAGTGGTGGGCTGAGAGAATAAATCAATGTTTATTTTAA
>XR_005051874.1
CGGGACTCGCCAAAATACTTTCGTCATCGCCCTAACCATCTCATTTGGACTGGAATCCGGTCATGGAAGCTTCTGACTTCATAGCTAGCTAGAAGAAGAATCAAGCTCTGGAGTAACTGATGGGAGATAACATGGTGGATCAGAGCAGTCCTATGCGGGTGTTGGTGACTGGGGGGACTGGTCTGGTGGGCAGGGCCATAGAACATGTGGTCAAAGAAGAGGGAGGAGCgcgggagggagaggagtggatcTTCCTCTCCTCTAAGGATGCAAATCTCATGGACATGGGTGAGACGCAGGCAGTGTTTTTGAAGCACCAGCCCACCCACGTCATCCACCTGGCAGCCATGGTGGGAGGGCTCTTCAAGAACATGAGGGCCAACCTAGACTTCTGGAGGAACAACATCTACATCAATGACAACGTCCTGCAGGCAGCCCACGAGGTGGATGCTGTCAGGGtggtctcctgtctctccacctgcATTTTCCCTGATAAGACCACCTATCCCATCAATGAGACCatgATCCACAACGGCCCTCCTCACGAGTCTAACTTTGGCTACTCCTATGCTAAGAGAATGATCGATATCCACAATagGGCGTATCACCAGCAGCGTGGGCGATGCTACACAGCAGTGATACCGACCAATGTGTTTGGCCCTCATGATAACTTCAACATCGAGGATGGACATGTACTTCCAGGCCTCATACACAAAGCATACATTGCTCAGAaggagGGTAGTCCATTGGTGGTGTGGGGCTCAGGAACTCCCAGAAGGCAGTTCATCTACTCATTGGATCTGGCTCGTCTCTTCCTCTGGGTGCTGAGAGAGTACCCTGAGGTGGATCCCATCATACTGTCTGttggtgaggaggaggaggtgtccaTTAAGGAGGCAGCAGAGGGCGTTGTCGAAGCACTGGGGTTCAAAGGTCAAGTGACTTATGACAGAACTAAAGCAGACGGTCAGTTCAAGAAGACAGCCAGCAACGCCAAGCTGCTGCGGTACTGCCCCAACTTCACCTTTACCCCCTTCAAACAAGccttgaaGGAGACATGTGATTGGTTCGTGGCCAATTACGACACCGCCCGCAAGTGAAGATTCCTCAAAACAGATTGGCTGTTAGGAAACCAGTCCTAGGAAGGAAGGAGCAGGAATAGGGGACTGTGATGGAGGGGTCAGGAGGAGTGGAGCTGAAGGTTCTAGAACTGACAAAGAACTTAGGACTTAGAGCGTACATGAAGAACATTATCTGCCATTAAATGAAGTCCTGTTAGACTGATGTAATGTGGTCCTGATCATGTTGCTGAGATTCCATGAAGAATGTGTAGAGTGTAGGCTGGGCTAATCGCTCTGTTTTAACACTCAAACAGCATCCTGTTCCTATATCAGTTGTACTCAAACTATTTGAGAAGGTGGCAAAGGTCTGGATGGCTATTGTAATTTATCGGCGTAATAATGAATCCTCAACCCATTCgaccccaaactgttcacaccccttttGTTGGCAGAGAAAAATtaatgttttaaagctaatttcctgcaattctacacattttccatGTCTTATTTGTTGATATACCAGGAGTTGAATCCTGACTGTATTGACCCCATTCTGAGTCTAGATCCAGCCTACGGTCCAACTGTTGAGTATGGctgccctatatagtacactacttttgaccagagatctATGGCACTATGTaggacagggatgggcaactccagtccttgagggcctgattggtgaaaCACTTTTCGCCCATCCCTAGccaacacagctgatttaaactaATTACATtcaactgaagatcatgattagttgattattggagtcaggtgtgttagctggggctggggaaaaACTgacacaccaatcaggccctcagGGACTGGAATTACCCACCTCTGATGTAAGATGTGTCCCAAATAGTACCCTACTTCCTATCTTGTCTGGAGTGACCAGCAGGACTCCTATCTCCTCTATAACCATGTCTATACCATATGACTAGAGTGGGTATAATGGACTTAAACTAGTTATTTGTCCATAGGATTCCCTCTATGTCCACCCAATATGGCAACAAAATAGAATTTTCCACAAATAAATCATTGTGCTGCCATTTTGAGTGGGTTGTTCACTACTCAATTTGTCTGCTGTATCATATAGAATACCAGGTAGTTTTGGATATGTTCTTTTATAACTTTCTTCACAAAATACAACTGTGCAATATGTACATGAGTGGTGGGCTGAGAGAATAAATCAATGTTTATTTTAA

Function

NR:

description
GDP-L-fucose synthase-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0042351 'de novo' GDP-L-fucose biosynthetic process biological_process
GO:0050577 GDP-L-fucose synthase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function

KEGG:

id description
K02377 TSTA3, fcl; GDP-L-fucose synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978530.1 False 3271 mRNA 0.45 10 80796999 80806535
XR_005051874.1 True 2278 mRNA 0.47 11 80796999 80806535

Neighbor

gene id symbol gene type direction distance location
LOC110523013 LOC106560380 coding upstream 10872 80595287 ~ 80786127 (+)
mep1b mep1b coding upstream 223662 80566654 ~ 80573337 (+)
LOC110522891 LOC106560392 coding upstream 232259 80560749 ~ 80564740 (+)
ttr ttr coding upstream 811232 79982485 ~ 79985767 (+)
LOC110524640 LOC106560363 coding upstream 817214 79956565 ~ 79979785 (+)
pycr3 pycrl coding downstream 11943 80818478 ~ 80826723 (+)
LOC110524653 LOC100195912 coding downstream 20478 80827013 ~ 80829906 (+)
mylk4b LOC106560377 coding downstream 67480 80874015 ~ 80943538 (+)
gmds gmds coding downstream 167631 80974166 ~ 81230680 (+)
LOC110524662 exoc2 coding downstream 610857 81417392 ~ 81575395 (+)
G445327 NA non-coding upstream 5108 80790405 ~ 80791891 (+)
G445328 NA non-coding upstream 6710 80789369 ~ 80790289 (+)
G445382 NA non-coding upstream 123523 80672979 ~ 80673476 (+)
G445290 NA non-coding upstream 245043 80551632 ~ 80551956 (+)
G445284 NA non-coding upstream 256664 80540025 ~ 80540335 (+)
G445459 NA non-coding downstream 24781 80831316 ~ 80831578 (+)
G445462 NA non-coding downstream 26725 80833260 ~ 80833547 (+)
G445416 NA non-coding downstream 33033 80839568 ~ 80839788 (+)
G445468 NA non-coding downstream 55135 80861670 ~ 80861921 (+)
G445726 NA non-coding downstream 291804 81098339 ~ 81100975 (+)
G445211 NA other upstream 561571 80234880 ~ 80235428 (+)
G445204 NA other upstream 579909 80216478 ~ 80217090 (+)
LOC110524622 LOC106560333 other upstream 2538543 78245839 ~ 78288092 (+)
G442273 NA other upstream 3213772 77558330 ~ 77583227 (+)
G441903 NA other upstream 3528233 77268212 ~ 77268766 (+)
G446381 NA other downstream 1089269 81895804 ~ 81897781 (+)
G447001 NA other downstream 1617663 82424198 ~ 82442223 (+)
G447020 NA other downstream 1646071 82452606 ~ 82458383 (+)
LOC110524684 NA other downstream 2982483 83788574 ~ 83794357 (+)
G448698 NA other downstream 3495565 84302100 ~ 84302473 (+)

Expression


Co-expression Network