LOC110524640 (LOC106560363)


Basic Information

Item Value
gene id LOC110524640
gene name LOC106560363
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79956565 ~ 79979785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604485.2
CACCTTTCAAAAATATTCacccagaggaagagagggggagaaggggtaaGCTACATGCTGTAGCTGTCCAGTGTCCCTGAGGAGAAAGTACATAAGACACCTCCCTCCCCTCATATTTAACACCCCGCTCATGAATTCTCAAGACTAAATTCTACATTCTGAGGGAGAGAGTAAgactaaagagagagggggactgtACTGTACAATAACTGTCTGTATGGTACAGACTCTATAACACTGTCATGGCTAGGGTCAGGCATGCAGGAGTCTGCCTGCTGCTTCTGCTGATCGTGGCACTGGTTATCAGTGCTGACGCAGAAGCAGAGATGCGAAGAAAGAATctcaggagacagaagagagaatgGATCCTGCCTCCTGCCAAAATCTACGAGAATACAGACTACACAAAAAGAGAGTACATTGCCAAGATCCGCTCTGATAAGGACAAAGAGGTGAAGGTGGAGTATTACCTGGCAGGGAAGGGGGCTGACAAACCCCCCTTTAACCTTTTTATTGTCAACCCCGAGAACGGCTTTGTACGCATCACTGGCATCCTGGACCGGGAGAAATGCCCCATGTACAACTTGACTGGAGTGGCCAGGTACAGAAACGGTACCTTGGCGGAAGCAAATATTCCTCTGCAGATTCATGTCATTGATCTGAACGATAACTCACCTTACTTTGAGCTCCACTCTGGGTCCATCGCAGAGTCCAGCAAAGCAGGCACAGAAATCATGCAGATCATTGGGAAAGATGATGATCAGGAGGGGAGCATCAACTCTAAGATCCATTACAAGATCCTCAGCCAGAAACCAGCAGGGTCCGGAGCCATGTTCACCATCGATGAGAATACAGGGAAACTCTCCGTAAAGGATGCCACACTGGACAGAGAGACTCACGATTCGTACACTATAATCGTCCAAGGGACAGATATGGGCGGGGCAGCTGGAGGCAACACGGGAACAGGAACTGTGGAAATAAAGGTCCTGGACATCAATGACAACATCCCCACACTGGAGAAGGGGCAGTATGCAGGGAACGTTGACGAGAACATTGCTGATGTCATTGTGATGAGGATCAAAACAGTGGACAGAGATCTAGAACACACAGATAACTGGCGGGCCGTCTTTCACATCACCCAAGGCAACGAGGACGGACTCTTCTCCATCGAGACGGACCAAGACACCAACGAAGGCATTCTGAAGCTGATCAAGGCAGTAGATTTTGAGGAAGTCCAGAAATTAGAACTTGGAATAGTCATTGAGAACGTAGCTCCTTTTGTTGTAGGGAGTGCTGAAGCGATGGATGTGGATGTTTATGCTGGGGGGGAAGGGCCGGGAGCTGGAactggagctggggctggagctggagctggggcAGGGGCTGGAGCAGGGGCTGGTGTTGAAGTAGGAGTGGATGTTGGGGGAGATGTGGGGGTGAATGCAGGGGTGGATGTGAATGTAGATGCTGGAGCTGGGCCCGGGGTAGGTGTTGGGGCTGGGGTTAAACCAGGAGTTGGGCCTGGTGTTAAGCCTGATCCCAATGGGAAGCCGAAACCAAAGCCAAAGCCTAAAGGTGGGAAGAACTACCCGATTTCGATCGCAGTTAACAACATGCCGGAAGGTCCAGCATTTAAGCCCAGCACCAAACCTGTGCCTGTCTCTGAGGATCCCAACAAAATGCCGAAGGATGGAGTGATCGCCTCGTACCCTGCTGTGGACGGAGATACAGGGGAGCCTGCTGAGAACGTCAGGTATGCCAAAGCCTATGACCCAGACAACTGGGTGACCATTGATGACAAGACAGCTGAGATAAGACTTATCAAGACGCCAGATCGAGAGTCTAAGTTCTTGGTGAATGGGACATACTTTGCCAAGATACTCGTCATTACCCAAGATATGCCCTCTAAGACAGCCACGGGCACCATAGCCATCCAGGTCCAAGACTCCAATGACCACTGCCCCATGCTGACTACTACCTATGAGAGCGTGTGCTCGGGCAAACATGCGGTCAACGCCACCGCGTTCGACGAGGATGTCTCGCCCAATGGAGCTCCGTTCACCTTCACCGTGGTGGCTGAGGGGACACGTGGCAAATGGGAAATAGAACACATCAATGGCACGACGGCTGTCTTGAGATCTACTGAGGCATTATGGCCGGGTGAGTATGAGGTGAGGGTGGCGGTAGCAGACGAGCAGGGCCTGTCCTGCCCAGAGCCACAGGTGTTCAAGGTGGAGGTATGTACCTGTTTGGAGGGGGAAGACTGTGGCTCCAGGACTATCAGTTTACGCCAAAAGACCACCGGAGCCATAATTGGTACCCCTGCCATCGGACTGCTCATCTTAGCCAGCTGTGTTCTGCTACTGGTACCTCTGATGCTGCTGTTCTGTCAGTGTAGAGGAGCCTTCGCTGACCAGTTCACTGACTTGCCATTCGATGCCAAGGAATACCTCATATCCTACCACactgagggaaagggagaggataAGAAGGTGCCCCTACTCAGTATTCCTACAACCGTAACTGATGGAAGGGCTGCACTAGGAACAGGATCAATTCGGCCAGCAAACATCGCCACAAAATCCTCACGTAATACTACAAACAATATACGTCAGAGCAGTGGGGTCTCCAGTGAGGACATGCACACACTGCGTCGGGAGCAGAGCCACATGGGTATGGAGATGGACTACACCTATGGACTCCAGAACGGTGGAGGCTTTGAGCCTAGTATGGGGCTGGGAAGCAGCACCATGCATTCCAGATACGCCACACACACCTCACATGTCAAACAAGACATCTATGAGGACATGGCACTCCCATGTACTTTCCTGGATGGCTACTACTCACAGAAAGTGACATGTGCATCTCAGAACCCTCCATTGAAAGACAGTAAGTTGGTGTATGACTACGAGGGCCAGGGCTCTCCTGTCGGATCGGTGGGATGCTGCAGCCTCCTGGAATCTGACAACGACCTCCAGTTCCTCAATGACCTGGGGCCAAAGTTCAAGACCCTGGCTGACATCTGCTCTCCTCCAAAACCTCAACCCAAACCTCAACCCAAACCCAGAATGGTGGAGCGCATCTTCGAGCCAAAACACCCCGAAATCAAAAGAGAGAGCATCGTCACCGCCAGCAATGTTAACATCACCAAATCTTCCATTAGAAATGTCAATATCAACCAATCGTCTACCAGCACCAGCAGAGTCAATATCTCCCAAACACCTCCCACCAGTCCCCCTGCCACTGGGGTTAGTAACTTCTCTAACAGTCAGTCCGCCACTTTCCCACCGCCTCCTACGCAGACGATTCTGCTGCAGCAACAGCCTATGTACTACACCACCATGCAGCCCGTGGTGCAGCCCCTGATGCAacccatacagtatgtactggCTGATGGCGGCTCTACCACCAACCTAAAGCGTATGGTAGTGCTCAACGGGCCCCCTATGTCTGGAAGCATGGGAAGTCTGGGAGGCCTTGTCATCCAAGGCAACAGGGTCATATCAGAGACCTCCACAAGCCCCATCAGTCCCAGTACCCCAGGAAGCCCCACCATGTTGGGGCTGGGTAGTCCCAGAAGCCCTGGGTGGATCCAAGGCTCCCTACCCAGGGGTGGCCTGGGTGGTCTGTCTGTAGTGGGGCACAGCCCTGATGGTAACTATGTTTACATGGAAAGGCAGGTTAATGTAAGTGGAGAGCCACAGGTGGGGTCTGGGGTCCCAGGTGTACCTTCTCAGGGCAGTTTGCCCAGGGGTGCGTTCCTGGTGAAGGAGGCTGCTCCCCCTCAGGGGGTTTTAGGCCTGGCAGCCCAGGGTGTGGGTGGGGGTGGTGGAGGTGTGTATGGCGTTATGCCAGGACACACCTTTACAAGGGTGAGGCAGGTTGGGGGTGGGCCTATTGGGGTTGGGCCGGCTGAAATGGGGCCAGGGGGGATAGGGCAGATAGTTATAGGATCGCAGGGACTCCCAATGTGGGTGCCACTGAGCCCCCCAGGGGGTAGCCGTGGACAGATGGAGGGGGCAGCGCCAACAGGTGATTCTCAACCAACTCCGGTTACTGTTGAAATACCAGAGTCATTTGAGTCAGTGGCAGAGATTGAGAGGAAACTGGTGTTTGAGGGCCATAGTGAACCAGGTGAGAaaatagaggaggaggaagaggaggaagaggaaggggaggaggtggaagaagaggaggaggaagaagaggaaaagcaggaggaagagaatgaggaggaggaggaagaggagcctTTAGAACAGACAAAAGAAACAGCTGTGACTGAGGAAGAACCCGTAACTTTAGCTTTGGCCTCAGAGCCATCAACAGAACAGGTAGAGCCATCTGAGTCACTGGAACACAAAGTAACATACCAATCTATTGAGTCAAGCCATCCAACAGATGAAGATGCATCAACTCAATTAAATGAAGTTTCTGGAGCTCTCAATGAAGAAGGCCTAGTTGACTCTGAGGACCAGCTGTCCGATGAGGATGTGTCCATGGTAGTCGAGGCCTCCTCAGAAGAAGCATCCATGTCCGAATCAGACATTATAGATTTAGTTGGTACAGATCAGCCAACTGAGGATGAAGACTCTATAGATCTAGTTGGTACAGATCAGTCAGCCGAGGAAGAAGACATTATAGATCTAGTTGGTACAGATCAGCCAGTCAAGGAAGAAGACATTATAGATCTAGTTGGTACAGATCAGCCAGTAGAGGAAGAAGACAATATAGATCTAGTTGGTACAGATCAGCCAGCCAAGGAAGAATACATTATAGATCTAGTTGGTACAGATCAGCCAGCCAAGGAAGAAGACATTATAGATCTAGTTGATACAGGTCCGCCAGTAGAGGAAGAAGACAATATAGATCTAGTTGGTACAGATCAGCCAGAAGAGGAAGAAGACATTATAGATCTAGTTGGTACAGATCAGCCAGAAGAGGAAGAAGACATTATCGATCTAGTTGGTACAGATCAGCGAACCGAGGAAGAATCAACAGAACTGACTCTGGAAGAGGAAGTGGTTTCAGAATCGCAGGAATTTCAGCTAACGGTGGATCCAGTCACTAACGGTCAACTAGAGAAGGGTATTACTGAGACAGAAGAGATGATGGTATCAGATGCACAGCAAGATCCGGTCACAGTTGATGACATCACTGATAGCCAAGAGGAGGGTACAGCTGAGGAGGAAATTATGTCACAGCTTCAGTTAGATGAGAAGGCACCTGAAGAAGTTTTCTTAAAATCAGAATTGCTCATAGCGGCTTACAGTGCACTTGATGGCCAAGAAGAAGAGGGTAGTCCTGAGGAGGAATTGATGTCAGAGTTGCGGCAGAATCAGCCAATATCACATAGCGACACTGATGTCCAGGAGGAGGGAAGTCAGGGAGATGAGGAGGCAGCGCTGAGTGCTCAGAtaggagaggtgaagggagagatggaggaagaagtggaggaagagatggagggagaagaggaggaaaaggtggagatggaggaagagcTAGAGGGAGAGCTGGAGTCTTCCCAGGcgacagaggaggaggtggagggagaggtggagtctTCCCAGGcgacagaggaggaggtggagggagaggtggaggaagagatggagggaggggtggaagagatggagggagagctggagggagaggtggagtctTCCCAGGTGACAGATACTTCTGTGGTACAGAGTGAAGCATTTGATGAGTCAGCACCAGAACAGGAGTACACAGAGGTAGatcaggacatagagacatcagaagAGACTGAAACACAAGACTCAGAGAACATAGAGGACATACCAAGCCAGTATACTACAGGCCTGATGCCAACGTCAGGTGATGGAATGATAGACGAGGGCACTGTTGTTAGAGAGAGCCAAGTTTCTGTTGATCAAGATTTATCTGGAGGCGCAGACTTAGTGACTGTGGAGGGTGAGGTGGAGTCTGTTGAACTAGTAGCAGAAGAAGCAGGTTTTTCAGCCCTAAAGGCTACAGGTGATGTAGAGGAATCTGAAGAGGATGACGAGGTGGGAGAAAGTCTGGTCACCTCTCGCCAAATGGCTGAAGTCAAAACACTAAGAGAAGAAGTAGACGATAGTGAGAATGTtgtaggagaggagatggagtctgctgttgagACAGTTGAGGAAGTAGAGGCTAGTGCTGACCAACAGACAGAGTCCACAGTAGCTAAAGAAGAGATTGAGTCCCCTAGCGAAGAATTGGCCGAGGACCTAGAATTGACCTCTTCAACACCAGAGGCTACAGGTGAGGTTGCTGTTGAGGCAGGTGAGGCTATAAATGCAGTGGCAGGTGCAGCAGTGGATGATACAGTAGTGGAGGCTGCGGGTGAGACATCAGGTGAGGCCGCAGGGGCAGCTGGTGGGTCAGAACAGGCCCCAAAGCCATTGGCTTCATCTTTCCGTAGCAAATTCAGGATGGGCTCCAATAAAGATTCTACTCCCAAGAGTCCAAAGAGTCCCACAGCAAAGTGCAAACAACAGTGAGAGCTCTTTGCACTCAGCCATAATGCAGAgaatatttttgtatatatccgACTTTCTGTTTATAGGTTTTTGTTCATTGGTTTTGCTTCACAGGTTTATGTTTGTCAGTCATTGTTTTCTCAATCATAGATGATCTTTTATGTAAAGCAGTATGTTGGGTCTTTCAGCTTTtgtggttctggtcaaaagtagtgcactgtgacgcagcggtctaaggcactgcatctcagtgcaagaggcagtCCCTGGTTCGGTCCCTGGTtcggtccctggtttgaatcaaggctgaatcacatccggctgtgattgggagtcccatagggcagcacacaattggcccagcgtcgtctgggtttggccgaggcaggccatcattgtaaatctgaatttgttcttaactgacatgcctagttaaaggttaaataaaacacatAGGGTGACACTGTGGTCTGTGGTTCTCATAGGTGTCATAAAATATCATATCAGTTGTGATTCCCCTTGGGGAATTGAGAAAATAACAATTAAAACAAACACGCAGAAACCTGCAGAGCGACTTCACACATTCACCACAAAACTCTCTAAGCACAAGTCAGGAAAACAGCACACCCATCTATTACCACAGACTGTCACGTTTTATATGCAAATACTCTGATCAACTCTTTTCCATACCTTTTAACATCACACCGTTTCTGTTCCTCCATAGTTTCCCACTCCTGTTCTAATAGCCCCTCTGATGGTTATGACAGGGCGTGGCAGGTTGAAGAAGCCAAATGTATTTATTGTCAATGTTCTGCAGAGTAGTGAACAGGCAATTACTGCTTTATGAACCAACCTTCAGAATTTGGCAAATGTGAAATATAGATCAGTTTTTTTTCCTGTTTGTAGGTTTTTGTTAATTGGTTTTGCATCACAGCTTTATGTTTGTCAGTCATTGGTTTCTCAATAATGGTTGACCTTTTATGTAAAGCAGTATGTTTGGTCTTTCGGTTTTGTGGTATGTGGTCTTATTTCAGCCTTTACTACAAAGTCAATGGGGTGTCAGCTTTTTTCAAACAGAAACTACTTAAACATCATTATTGTAAATCACAAGACAGAGTGGGGTATGTTTAGATAAGACTGTGTTTGTATGGGGGAAAATAAATGTGAAAAATAATACTTGTAATGTGCAATTTATCCTGCATCATCATATACTATATCACTGGGAATCACTACACAGACACCATTGTTTTTGTTAACAATGATGGTTTGATGTTTGAAACTTCTGACGTTGAATGTTGTTTCCTTTTTTTAACAAATATAATAAATGAAATAAATTGTCTGAACACATTAAATAAAGGTTT

Function

NR:

description
uncharacterized protein LOC110524640

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604485.2 True 7855 mRNA 0.49 14 79956565 79979785

Neighbor

gene id symbol gene type direction distance location
LOC110524639 LOC106560387 coding upstream 20260 79914801 ~ 79936305 (+)
taf4b LOC106560344 coding upstream 738295 79206247 ~ 79218270 (+)
LOC110524636 LOC106560346 coding upstream 750472 79203409 ~ 79206093 (+)
rad54l rad54l coding upstream 756385 79192174 ~ 79200180 (+)
LOC110524632 artn coding upstream 767198 79157011 ~ 79189367 (+)
ttr ttr coding downstream 2700 79982485 ~ 79985767 (+)
LOC110522891 LOC106560392 coding downstream 580964 80560749 ~ 80564740 (+)
mep1b mep1b coding downstream 586869 80566654 ~ 80573337 (+)
LOC110523013 LOC106560380 coding downstream 615502 80595287 ~ 80786127 (+)
LOC110524651 LOC106560379 coding downstream 817214 80796999 ~ 80806535 (+)
G444875 NA non-coding upstream 10737 79945395 ~ 79945828 (+)
G444827 NA non-coding upstream 102976 79853292 ~ 79853589 (+)
G444802 NA non-coding upstream 111416 79810162 ~ 79845149 (+)
G444795 NA non-coding upstream 150469 79805822 ~ 79806096 (+)
G444792 NA non-coding upstream 152027 79804119 ~ 79804538 (+)
G444921 NA non-coding downstream 65306 80045091 ~ 80045367 (+)
G444934 NA non-coding downstream 86011 80065796 ~ 80066035 (+)
G444951 NA non-coding downstream 123350 80103135 ~ 80103582 (+)
G444952 NA non-coding downstream 130162 80109947 ~ 80110382 (+)
G444955 LOC106560384 non-coding downstream 132634 80112419 ~ 80112976 (+)
LOC110524622 LOC106560333 other upstream 1698109 78245839 ~ 78288092 (+)
G442273 NA other upstream 2373338 77558330 ~ 77583227 (+)
G441903 NA other upstream 2687799 77268212 ~ 77268766 (+)
LOC110524571 LOC106560285 other upstream 4778278 75161317 ~ 75178287 (+)
G438719 NA other upstream 5180096 74772009 ~ 74776469 (+)
G445204 NA other downstream 236693 80216478 ~ 80217090 (+)
G445211 NA other downstream 255095 80234880 ~ 80235428 (+)
G446381 NA other downstream 1916019 81895804 ~ 81897781 (+)
G447001 NA other downstream 2444413 82424198 ~ 82442223 (+)
G447020 NA other downstream 2472821 82452606 ~ 82458383 (+)

Expression


Co-expression Network