taf4b (LOC106560344)


Basic Information

Item Value
gene id taf4b
gene name LOC106560344
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79206247 ~ 79218270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604477.2
TTATGGATGATTGCAAATAGTACTGCTTTGGGCAATTTAGTTttgtattgggccagtaaccgaaagcaAGGTACTTagccctaattgctctggataagagcatcttaaattactcaaatgtaaatgtgctGTAGCCTAACATTTGTGTGCAAATAATGGGTGTACACAGTGTTTCCAGAACTGATGTAGTGAAATTGAGTATAGTTCAAGTGCTCACCTTTGGGGATGCTTGGCTTCCAGGCAGCATTTATTCTCCGGGAAACACCGGTATGACGTGCAGGTGGCTCATATTTCTGCGTCATCGCGTAAACCAGCCAATGagagtacagtataacagaaTCCCTCGCGCTTTCAGAGCGCAGTGCAGACTCCGTATGCACGCTACACATGGCTATAAACTCTTGGTCACTTGCTGGGCGCGTGGGTTTGAAGATGAATGAACACGACTAAGATCTCAAAGTCATGCCAACCACCGAAAACTCCGCAAATGAAACTCCAAATCAGGCAGAGAAAAGTGCCTCCCCGGCAAACAGTGGCAGTGGAACAGCGAATATCTCGGACACTATTGTGCAGGTGGGAGCGACAGTCAAAGCCCCGACACCTTCTGCCAGTTGCCCTGCAATAGCCCCCTTCATTTCGAAAGGTACAACGAAAGACCCCGACCCTGCCCAAACCCAGCCACAGAACGCAAATAATGGCACCCAGCTTCCGTTGTCCGTGATGCAAGTTGCACCTACTACCGCAACCGTGACTGTCGCACCTGTCCAGGCAAGCACTCAACCGGTCACGTCATCCACAACCATAAAGTCAGTTGTGAGCAACCTGCCTCCAACGGTGGTCATGATAACCACGGGACTGAGACCCATTTCTCCGATGGTTGCGGGACCGAGAGTGAGCTCTCCAACGGTGACCATGAGCGCACAGCCACCGGTGCGCATGAGCTCTCCTTTGGGACCAGCGGTGACTCGAGTTGCCACCGCGACCCAGGTACCGGGGAAGGCTGCAGTGATAGCCATACCAAGACCAACAACTTTTCAGCAACCAGCTGCATCGATCAGACCCCCACAGACCACGTCTGTCCAGCTTCCAGCCAACTTTCATATCCCGCCAGGCATGGTGCTCATCCGTAGTGACAGTGGCCAACTGATGCTGGTGTCCCAACAAGCTTTGGCTGCAGCCCAGGGCCTCGCAGCCAGAACTCCTGGCACTGGGACCTCTCCTAGCCCAAGGCCACCAACCACacagGTGTCTGCAGCGACTGTCGTGAGAAAAGCTGAGAATCCAGGTGTGATCAGAGTGCCTCCTCCTCCTAGCCCCCATGTGACCACAGCACAGAGTACACCCATGGTTAAGGTCGTAGGGGTTGCTCCGACCCCTCCTGCAGGCCAGATCCAGATCCCCAGGCCTATGATCCGCCCAGTGGCCCCTGTCACAGTCACCCGTTCTCCTGGCCCTGGTCCTCTCATCATCCCAACCAAACCCACCAACACCCCCAGGGCCACACCCCCGACCATCACACCTGAGGTCCTGGAGAATGTGAAGAAGTGTAAGAACTTCCTAGTGACGCTGATCAAGCTGGCCTCTAGTGGAACCCACTCTGCTGACATGGCCAAGAACGTCCGAGAACTCGTCAAGAGCctgctggaTGGGAGACTTGAACCTGAGGAGTTCACTGACCAACTCTACCGTGAGCTCAAGTCTTCTCCCCAGCCCTACCTGGTACCCTTTCTCAAGAAAAGTCTCCCAGCTGTGCGGCAGCTCACCCCCAACCCACAGCTCTTCATCCAGGAGGTTGACCAACCGAAGCCACAGGCTCCAGCCACCTCCAAGGCCCCGGCCTCCAAAGCCCCGGCCCCCACTGCAGGCCGcacccctaccctcctctccaccAACTCTAGGCCTGCCCACCTCAGCGCTGCTAGTGGCCAGTCAATCAAATCCACCCAGCTAGTGATCCAGCAGCCTAGAGGTGTGGTGTATAAGCCTGCTGTGACAAACCCCACCCCGGCCCGTACATACCTGTCTGTTCAGAACAGGAGCCTGGCCAAACCTATGGTCATTCAGTCAGGACAGTACTACAACACAGGTGCTGTTGTCAGGCGGACTCCTTTCCTTGTCCCACCGCCTCCAGCCCAGAGACACGCCTTCAAGGACAGTGTTGGTTCTTTCAGGGAGGAGGATGACATCAACGATGTGGCCTCCATGGCTGGGGTCAACGTGAGCGAGGAGAATGCCCGTATCCTAGCAACCAACTCTGGGCTCGTGGGCTCTGTGGAGCGATCCTGTCAGGACAAACCCTTCCTGTCCCCAGCCCCGCTGCTCACACACATCCTCCACACTGgtgagaagTTTGGAGTGTCCGAGGTGGGGTCAGACGTGGTCAGTCTGGTGTCTCACGCCACACAGGAGCGTCTCCGAGACCTGCTGGAGAAAGTCACAGTGGTGGCACAGCATCGCAAGATTGCCCTCAAGgagGACTACAGTCACGTTCAGACCAGTGATGTGCGTTCCCAGCTCCACTTCCTGGAAGAGCTGGAACGTCTGGAGAAGCAGAGGAGAGACGACGAGGAGAGGGAGACACTGCTCCGCGTCGCCAGGAGTCGCTGTAACACCGATGACCCAGACCAGCAACTACTGAAACAACGGGCCAAAGAGctcCAGCAGTTGGAGCAGGCTCAGCTGCAGCACAGAGAAGCCAACCTCACTGCCCTGGCTGCCATCGGACCTCGCAGGAAGAGACCACTGGACTCCAATGGAAACCAGGTGGGGCCAGGTGGCATTATGTCAGTACTACAGAGGGCTGGGGTTCAGAGAGTGACTGGGGTCTCTCTGAGGGACCTACTCTTCTGTCTGGAACAGGACCCTCCTCTAcgacactctctcactctctacaaGGGCCTGCTCAGATAGTATCTCTCCCCCACCGTTTGTGCCAGATTCTGTGTGCCTTACCACTCTTTCAGAtgtatattatatttatttttattttgttattttt
>TU502208
CTTGGCTTCCAGGCAGCATTTATTCTCCGGGAAACACCGGTATGACGTGCAGGTGGCTCATATTTCTGCGTCATCGCGTAAACCAGCCAATGagagtacagtataacagaaTCCCTCGCGCTTTCAGAGCGCAGTGCAGACTCCGTATGCACGCTACACATGGCTATAAACTCTTGGTCACTTGCTGGGCGCGTGGGTTTGAAGATGAATGAACACGACTAAGGTTAAACCTGCGATTTTTCATGTTTTTCTGTGATTCCTAGACTGGCATTTCCAACAATTCACTAGACCTGTTCCACTTGCTGTTTATTGGTGGTGCTAGTCAGTTGCCCGCTAACTAGCGACAAAAAGCAACTACCAAAGGATTGCTATGGTGAGGTCATCTGAGAGATATTATTGCAAACTAAGTTATTGTATGTTTCAATTTAGATCTCAAAGTCATGCCAACCACCGAAAACTCCGCAAATGAAACTCCAAATCAGGCAGAGAAAAGTGCCTCCCCGGCAAACAGTGGCAGTGGAACAGCGAATATCTCGGACACTATTGTGCAGGTGGGAGCGACAGTCAAAGCCCCGACACCTTCTGCCAGTTGCCCTGCAATAGCCCCCTTCATTTCGAAAGGTACAACGAAA

Function

NR:

description
transcription initiation factor TFIID subunit 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604477.2 False 2998 mRNA 0.55 16 79206247 79218270
TU502208 True 632 lncRNA 0.47 1 79206475 79207106

Neighbor

gene id symbol gene type direction distance location
LOC110524636 LOC106560346 coding upstream 154 79203409 ~ 79206093 (+)
rad54l rad54l coding upstream 6067 79192174 ~ 79200180 (+)
LOC110524632 artn coding upstream 16880 79157011 ~ 79189367 (+)
st3gal3a st3gal3 coding upstream 64262 79062189 ~ 79141985 (+)
LOC110523012 kdm4a coding upstream 144883 79042364 ~ 79061364 (+)
LOC110524639 LOC106560387 coding downstream 696531 79914801 ~ 79936305 (+)
LOC110524640 LOC106560363 coding downstream 738295 79956565 ~ 79979785 (+)
ttr ttr coding downstream 764215 79982485 ~ 79985767 (+)
LOC110522891 LOC106560392 coding downstream 1342479 80560749 ~ 80564740 (+)
mep1b mep1b coding downstream 1348384 80566654 ~ 80573337 (+)
G443789 NA non-coding upstream 2976 79203017 ~ 79203271 (+)
G443790 NA non-coding upstream 4624 79201467 ~ 79201623 (+)
G443783 NA non-coding upstream 23446 79182531 ~ 79182801 (+)
G443780 NA non-coding upstream 26209 79179744 ~ 79180038 (+)
G443762 NA non-coding upstream 52021 79153862 ~ 79154226 (+)
G444166 NA non-coding downstream 34238 79252508 ~ 79252863 (+)
G444168 NA non-coding downstream 37081 79255351 ~ 79256003 (+)
G444176 NA non-coding downstream 68091 79286361 ~ 79325418 (+)
G444226 NA non-coding downstream 126107 79344377 ~ 79344587 (+)
G444234 NA non-coding downstream 134449 79352719 ~ 79353092 (+)
LOC110524622 LOC106560333 other upstream 947791 78245839 ~ 78288092 (+)
G442273 NA other upstream 1623020 77558330 ~ 77583227 (+)
G441903 NA other upstream 1937481 77268212 ~ 77268766 (+)
LOC110524571 LOC106560285 other upstream 4027960 75161317 ~ 75178287 (+)
G438719 NA other upstream 4429778 74772009 ~ 74776469 (+)
G445204 NA other downstream 998208 80216478 ~ 80217090 (+)
G445211 NA other downstream 1016610 80234880 ~ 80235428 (+)
G446381 NA other downstream 2677534 81895804 ~ 81897781 (+)
G447001 NA other downstream 3205928 82424198 ~ 82442223 (+)
G447020 NA other downstream 3234336 82452606 ~ 82458383 (+)

Expression


Co-expression Network