LOC110524632 (artn)


Basic Information

Item Value
gene id LOC110524632
gene name artn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79157011 ~ 79189367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604475.2
TAGACACCGCCGCACGCGCGCGATCCTTTGGAATCTAAATGGGACACGCCAACCATTCTAACTGAACCGGGTCAACTTTGGACGTAGAAAAACGATATACGGAATCAAGTTCATGTAGAGATTAAAATAAGGAACCGAaataatgGAAAAATGTGGAAGAGGCAGGAAGTGTCAACTGCCAAATATCACCTGAGGAACTGGAAGaTGATGCTGTGGGTGGTAGCCTCTCTGCTGACCCTGATAGAGGGGGTGTTCTCTGAGGAGGACCCAAAGGAGGCCCACACTGAGCAGCACCGAGCCCAGGAGAGGACCACCACCGCTGGGACCTGGCTCCCAGACCACTACCCAGAGGTCCACGAGCTGGAAGAGAAGAGGGGTGGCCATGGCCAGGCCTCCTGGCCTAGTCTTTTCGAGAACCCAGGTCTTGAGGGAAACGGAGAGGGCTATCCGAGCAGGTGGCAACGCTCACCTCCTGACCCAGACCCCGAACCCTCCCGTAGAGGCTCTCGCAAGAAAAGCAAAAAGCCCAAGAACAGCAGCCGGGACTGCCGCATGGAGAAGAAGGAGATGCGTGTCAGAGACCTGGGCCTGGGCTTTGACTCGGATGAGATTATCCTGTTTAAGTACTGTGTGGGGACGTGCTCGAGCTCCCGTAAGAACTACGACCTGGCCCTTAAGGCCCTGATGGAGAACGAGAGTATCCCCAGCAGGAAGGTGAGCGCCCACCCCTGCTGCCGGCCCACCCGCTACGAGACTGTCTCCTTCATGGATGCCCAGACTATATGGCAGACCATCAAGTGGCTGTCAGCGGCTAACTGTAGCTGTGTGGGGTGACGGCCAGGGAGTAAAAGGAAGTCTACCTGCAGAACACACATGCATAAAGAAACTCCAGGGTGAAGAGAGGAAGTGGCTAAGATGCCTTCACTGTGGGCGTGTTGGGCATAAATGGTGGATCAGAGCCTGGACCGAAGCCTTGGCCCAACGGCTGGGTTTCAACCTGACGTGGATCCACTTTGGATTAACCAGTCTTCTCCGGTAGGGAAAGCATGGATGTAAGATAGAGATACAGCCTATCAAATCCCTATGTTTAACAGAGGAGTTACATCCTCGGTCAGAGCCCAGGATTCACGGCTCTGGAGACTGGTGAGGAATGGAGTTCCTGGGCAGGGACTGGGGTGGTTAGGACTGGGGTGGTTAGGACTGGTTGTCTCCCTCCCTGTGCTGACAGCAAGGTGCCTTTGGTTATGTCAAAAAAGAGGAGATGGTGAAGCAAAAGCCTTGGACCATTGGACCTTAACTCTGAACCAGAAGAGGAGCATTTTGGGTTACATGTCACCTGACCGTAAAGAGGGCAAACAGTTTGAAGAACAAATACTTGTGTAGAAATATTAAGAAGTTAAGTTTTTTGGTTTCGAAGGCTCTCCAATAAGACCAAAATAACTATGAGATGTAATGCATTTTTATGTTTCCTTCTTCAATGGCAGCTCATCCACATAGGGATTGGTCATAGCAAGGTAGCTTTGAGCCAACCGTAGTACATCTCCCATCTCCAAGTGTTTCATCATGGCATTCAGTTGATTCCTATCACTAAGCACACATCTACTCTTACTTTAGTAACTCATGCATGCTTTGAGAACAATACCAAAACGGTATCAACTGTACCTACTTAGATTAACTGCAAAGTCTAGCAGAATCTGAAGCACTTGTTTGTAGCTTGACCGAACTTCTTTACTGTACATGTCTATAAACAGTGTGTTGTAGGATGCCATCACAGGGCCAAGGTCAGTCATGGCCCAGCCATACCTCATGCTGCCTGACACACAGCTTTCATCACATGGTTTATTTTCAGCGCTGAACGTGGCACTTCACCGCTGTCAATTTAACTTTTTGGATTACAAAGATAATTGAACATATTGACAACGGTTATTCAGAATGTGCTTATCATACTTTGTACCATGATAGTATACTGTTAATATCTCATATTGCATAATTTATCTATGTTATGTTTCTTATGGACAAACATAACTCTTCATTGACACCACTCTGTTGCATCTGTGTTGAAGGAAAGTTTGAGTGGACCCCATATGTACATAATGTATTCTGATTGGCTGCCTCTCCACACCTGACCATTTGAAATGGAGACATACAGCAGAGATAATAAGACATAatgtactgtagatacagtatatcaaaacAAGGGGAAAGTTTACGAACTAATGTATCCCACATATTGCATTATagtatatttatgtatttataaaGTATTGTATAAACTgtagctccctctctctgtgttctttagATTGTTGATGGTTAAGCGACAGTGTAGGTGTTGAGAAACATATATTCATATCAAGTGGTGTTAAGAAAATAAAAGTGAAGCATTATTTTTGTTCAACTGTTGGAGTTTGTACAGTAGATTTTCATAAAGAAATGTCCATCTGTTTGTAGTAGGCTATGTACATTGTGTACATTGTGCCTAGTTCTCAGGATCAAGCTGTTATGTTTTACATTTGCTGAAAGACATATCTCCTCAATCTCTTTATAGTTAGATATCATCTGGAGAACTATTGTTTATTATTGAAATGTTATGATCAATCTTTCAAGAAGTGTTTGTATTGACAATAATCAACAATCAAGAGTCTATTGAAAGATGTATCCATACATTGTTATTATATCCATGATGTCATTCATTGTCTCAATCTGTGTTTCCTACCCAGATCCCACCACCAATGGTAGTACCTACTAAAGTTTAACCAAAACATGTACTGAGAGAGGTTTCTATTCCATTTTAACCATGTGCTTCAACCGTAACACGTACAGAGATTTTGTGTTATCTAGTTGTTCACAGAAATATGTTTAGGGACTGGCAAAGTGTGAACACAGATGATAACTGGTCTTTATTCTGCCTTCAGTATATGTACGGTTTGTGGTTATATTAAGCTGCAGCATCTGGTGTGCATTTAATCTACAAACATGGGGCCTTCACCCATTGTTTAGGTCCAAACTTAACTTCCCTGTTAGATGCCATGCATCTCATCATCGCCGAATTGTACTTTAGGGAAAGTATTTATtacatttaaattatttatttattgtaattTTATGTGATACACTTGTTGTTACAAATATCAGATGTTTATAATTTATGAAGTGGCCATGTATGCTTTATTTTCTTTTACTATTGTCTTCTCTGTGGAAAGAGCAAGAATGTTTCCAAGCAACaagtctctgccccccccccccccccacacacacacacagacaaggagGGATTTACCTTTCAAAACAGTGCATGTAGGTATATCCACTACATGTTTATATGAACCAGATAGATACACTGATAGAAAACAATCTAATTTAACCTGGTGTAGCCTCCTCCACTAGCTCTGTCAGTCACATTTGTTGCCAGAGAACCTTGCCAAGAGATGAGTGTCAGTCCCTGGCACCCTGGTATCAGAGACCAAACACCTCTGTTCCCTTTTTAGATATTGCTCTAAAACCCAATTCATACCCTACACAAGTACACATCCACAATTAGCTATGCAAAATGGCAATCATGCGTTGTTCTGTCGCAAAAATATGCAAACGTGTGCAGCCCCGCAATTTGGAACTCAACGCAAGTATGTAGGATTACCTCTTGCATAGTTAATTGCATTATTTGATTGTTTACTTGTGTAGGTTATAAATTAGGCTTAAAGGGAATCTTCACAatttttcaacttcatattcatcatcccCAGCatcaccccaacatcaacatatgtgaaaatggtgcatttctatgttttgtcgTAAAAAGATAGGGgtagataagtgtttccaatgacatcatcggtGTGGATTGTGTGATTTTGACCAATTGTGAGTAGGCATTTTCTACTAATTGTCGACTAACTGGTTGATGTCATTAGAAACACTTTCTCCatctttttttttactacaaaacatataAACgcaccattttcacatatgttgatgttgaggaggtgctggagatgatgaatataaAGTTGAAAAATGTTGAATTTTCCCTTTTATGTCAGACACAGCACTAGGCCTACTTCTGTTCATGGGACCTTGTTGTAGTTCCATACATTTACCTGTTATTAAAACAACCTTATTATCCAGTGTTTAACGAAGACAATAAATGTTGGTATTCATATTATAATGACATGGTAGTGTATTGTTATtcttgttattattgttattgtgttactgtcATGTCTGAAAGGTCTCATGGATGCTATTGTTGTACTTCTCTTAAAAGAATAAAGCTTCTTTACATA
>XM_036978486.1
GCCGCACGCGCGCGATCCTTTGGAATCTAAATGGGACACGCCAACCATTCTAACTGAACCGGGTCAACTTTGGACGTAGAAAAACGATATACGGAATCAAGTTCATGTAGAGATTAAAATAAGGAACCGAaatagtaagtaggcctaatcATGAGCTTTTGTAAATTGAGTGTCATTTCACAGAAAGCAACCTGTGTAGGCTATTGTGGGCTGGGATCATGTGATAGACGATGGAATTTGACACCACCCCAGGCTTTAAAAAACCTGAGCCAACTCACATCTGTATTTGGAGCTACAATTTAACACTAACATCTGCAGTTTACAGTGAAGAAAGAGGGAGACTATTTCTATTCAATGAGAACGATACCTGTGACGCGGACCATAGCGCATCTCGGGCGCATCCATTGTGGAACATACAGAGAATCCCATGATCAAGTGAAGTTCTGTATGGAACTCTTATCATAGACAGGCTATCTGGAAGTTTTTCAGAAAACTTTGGCTGCATATTTTTAATAAAAATTAAGATTGCGCAAGTATGCCAGTGTATGTAAGAGAGGAAGCCAGAGAAATATTTCTAAGGAATAAAGTGCCATTGCATTTAGATTGTTTTGGTTTTATAAGGTTGATATTTGTCTGCTCACACACACGTCCATGATTGGGAAGGTTGTCGGAGTCGGTGAAGatgGAAAAATGTGGAAGAGGCAGGAAGTGTCAACTGCCAAATATCACCTGAGGAACTGGAAGaTGATGCTGTGGGTGGTAGCCTCTCTGCTGACCCTGATAGAGGGGGTGTTCTCTGAGGAGGACCCAAAGGAGGCCCACACTGAGCAGCACCGAGCCCAGGAGAGGACCACCACCGCTGGGACCTGGCTCCCAGACCACTACCCAGAGGTCCACGAGCTGGAAGAGAAGAGGGGTGGCCATGGCCAGGCCTCCTGGCCTAGTCTTTTCGAGAACCCAGGTCTTGAGGGAAACGGAGAGGGCTATCCGAGCAGGTGGCAACGCTCACCTCCTGACCCAGACCCCGAACCCTCCCGTAGAGGCTCTCGCAAGAAAAGCAAAAAGCCCAAGAACAGCAGCCGGGACTGCCGCATGGAGAAGAAGGAGATGCGTGTCAGAGACCTGGGCCTGGGCTTTGACTCGGATGAGATTATCCTGTTTAAGTACTGTGTGGGGACGTGCTCGAGCTCCCGTAAGAACTACGACCTGGCCCTTAAGGCCCTGATGGAGAACGAGAGTATCCCCAGCAGGAAGGTGAGCGCCCACCCCTGCTGCCGGCCCACCCGCTACGAGACTGTCTCCTTCATGGATGCCCAGACTATATGGCAGACCATCAAGTGGCTGTCAGCGGCTAACTGTAGCTGTGTGGGGTGACGGCCAGGGAGTAAAAGGAAGTCTACCTGCAGAACACACATGCATAAAGAAACTCCAGGGTGAAGAGAGGAAGTGGCTAAGATGCCTTCACTGTGGGCGTGTTGGGCATAAATGGTGGATCAGAGCCTGGACCGAAGCCTTGGCCCAACGGCTGGGTTTCAACCTGACGTGGATCCACTTTGGATTAACCAGTCTTCTCCGGTAGGGAAAGCATGGATGTAAGATAGAGATACAGCCTATCAAATCCCTATGTTTAACAGAGGAGTTACATCCTCGGTCAGAGCCCAGGATTCACGGCTCTGGAGACTGGTGAGGAATGGAGTTCCTGGGCAGGGACTGGGGTGGTTAGGACTGGGGTGGTTAGGACTGGTTGTCTCCCTCCCTGTGCTGACAGCAAGGTGCCTTTGGTTATGTCAAAAAAGAGGAGATGGTGAAGCAAAAGCCTTGGACCATTGGACCTTAACTCTGAACCAGAAGAGGAGCATTTTGGGTTACATGTCACCTGACCGTAAAGAGGGCAAACAGTTTGAAGAACAAATACTTGTGTAGAAATATTAAGAAGTTAAGTTTTTTGGTTTCGAAGGCTCTCCAATAAGACCAAAATAACTATGAGATGTAATGCATTTTTATGTTTCCTTCTTCAATGGCAGCTCATCCACATAGGGATTGGTCATAGCAAGGTAGCTTTGAGCCAACCGTAGTACATCTCCCATCTCCAAGTGTTTCATCATGGCATTCAGTTGATTCCTATCACTAAGCACACATCTACTCTTACTTTAGTAACTCATGCATGCTTTGAGAACAATACCAAAACGGTATCAACTGTACCTACTTAGATTAACTGCAAAGTCTAGCAGAATCTGAAGCACTTGTTTGTAGCTTGACCGAACTTCTTTACTGTACATGTCTATAAACAGTGTGTTGTAGGATGCCATCACAGGGCCAAGGTCAGTCATGGCCCAGCCATACCTCATGCTGCCTGACACACAGCTTTCATCACATGGTTTATTTTCAGCGCTGAACGTGGCACTTCACCGCTGTCAATTTAACTTTTTGGATTACAAAGATAATTGAACATATTGACAACGGTTATTCAGAATGTGCTTATCATACTTTGTACCATGATAGTATACTGTTAATATCTCATATTGCATAATTTATCTATGTTATGTTTCTTATGGACAAACATAACTCTTCATTGACACCACTCTGTTGCATCTGTGTTGAAGGAAAGTTTGAGTGGACCCCATATGTACATAATGTATTCTGATTGGCTGCCTCTCCACACCTGACCATTTGAAATGGAGACATACAGCAGAGATAATAAGACATAatgtactgtagatacagtatatcaaaacAAGGGGAAAGTTTACGAACTAATGTATCCCACATATTGCATTATagtatatttatgtatttataaaGTATTGTATAAACTgtagctccctctctctgtgttctttagATTGTTGATGGTTAAGCGACAGTGTAGGTGTTGAGAAACATATATTCATATCAAGTGGTGTTAAGAAAATAAAAGTGAAGCATTATTTTTGTTCAACTGTTGGAGTTTGTACAGTAGATTTTCATAAAGAAATGTCCATCTGTTTGTAGTAGGCTATGTACATTGTGTACATTGTGCCTAGTTCTCAGGATCAAGCTGTTATGTTTTACATTTGCTGAAAGACATATCTCCTCAATCTCTTTATAGTTAGATATCATCTGGAGAACTATTGTTTATTATTGAAATGTTATGATCAATCTTTCAAGAAGTGTTTGTATTGACAATAATCAACAATCAAGAGTCTATTGAAAGATGTATCCATACATTGTTATTATATCCATGATGTCATTCATTGTCTCAATCTGTGTTTCCTACCCAGATCCCACCACCAATGGTAGTACCTACTAAAGTTTAACCAAAACATGTACTGAGAGAGGTTTCTATTCCATTTTAACCATGTGCTTCAACCGTAACACGTACAGAGATTTTGTGTTATCTAGTTGTTCACAGAAATATGTTTAGGGACTGGCAAAGTGTGAACACAGATGATAACTGGTCTTTATTCTGCCTTCAGTATATGTACGGTTTGTGGTTATATTAAGCTGCAGCATCTGGTGTGCATTTAATCTACAAACATGGGGCCTTCACCCATTGTTTAGGTCCAAACTTAACTTCCCTGTTAGATGCCATGCATCTCATCATCGCCGAATTGTACTTTAGGGAAAGTATTTATtacatttaaattatttatttattgtaattTTATGTGATACACTTGTTGTTACAAATATCAGATGTTTATAATTTATGAAGTGGCCATGTATGCTTTATTTTCTTTTACTATTGTCTTCTCTGTGGAAAGAGCAAGAATGTTTCCAAGCAACaagtctctgccccccccccccccccacacacacacacagacaaggagGGATTTACCTTTCAAAACAGTGCATGTAGGTATATCCACTACATGTTTATATGAACCAGATAGATACACTGATAGAAAACAATCTAATTTAACCTGGTGTAGCCTCCTCCACTAGCTCTGTCAGTCACATTTGTTGCCAGAGAACCTTGCCAAGAGATGAGTGTCAGTCCCTGGCACCCTGGTATCAGAGACCAAACACCTCTGTTCCCTTTTTAGATATTGCTCTAAAACCCAATTCATACCCTACACAAGTACACATCCACAATTAGCTATGCAAAATGGCAATCATGCGTTGTTCTGTCGCAAAAATATGCAAACGTGTGCAGCCCCGCAATTTGGAACTCAACGCAAGTATGTAGGATTACCTCTTGCATAGTTAATTGCATTATTTGATTGTTTACTTGTGTAGGTTATAAATTAGGCTTAAAGGGAATCTTCACAatttttcaacttcatattcatcatcccCAGCatcaccccaacatcaacatatgtgaaaatggtgcatttctatgttttgtcgTAAAAAGATAGGGgtagataagtgtttccaatgacatcatcggtGTGGATTGTGTGATTTTGACCAATTGTGAGTAGGCATTTTCTACTAATTGTCGACTAACTGGTTGATGTCATTAGAAACACTTTCTCCatctttttttttactacaaaacatataAACgcaccattttcacatatgttgatgttgaggaggtgctggagatgatgaatataaAGTTGAAAAATGTTGAATTTTCCCTTTTATGTCAGACACAGCACTAGGCCTACTTCTGTTCATGGGACCTTGTTGTAGTTCCATACATTTACCTGTTATTAAAACAACCTTATTATCCAGTGTTTAACGAAGACAATAAATGTTGGTATTCATATTATAATGACATGGTAGTGTATTGTTATtcttgttattattgttattgtgttactgtcATGTCTGAAAGGTCTCATGGATGCTATTGTTGTACTTCTCTTAAAAGAATAAAGCTTCTTTACATA

Function

symbol description
artn Predicted to enable growth factor activity. Predicted to be involved in peripheral nervous system development. Predicted to act upstream of or within axon guidance and induction of positive chemotaxis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Biomarker of acoustic neuroma and pancreatic cancer.

NR:

description
PREDICTED: artemin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604475.2 False 4289 mRNA 0.42 4 79157011 79189367
XM_036978486.1 True 4829 mRNA 0.42 4 79157019 79189367

Neighbor

gene id symbol gene type direction distance location
st3gal3a st3gal3 coding upstream 15026 79062189 ~ 79141985 (+)
LOC110523012 kdm4a coding upstream 95647 79042364 ~ 79061364 (+)
ptprfa ptprf coding upstream 115355 78642382 ~ 79041656 (+)
LOC110524625 LOC106560333 coding upstream 777346 78358085 ~ 78379665 (+)
LOC110523011 LOC106560333 coding upstream 812098 78330068 ~ 78344913 (+)
rad54l rad54l coding downstream 2807 79192174 ~ 79200180 (+)
LOC110524636 LOC106560346 coding downstream 14042 79203409 ~ 79206093 (+)
taf4b LOC106560344 coding downstream 16880 79206247 ~ 79218270 (+)
LOC110524639 LOC106560387 coding downstream 725434 79914801 ~ 79936305 (+)
LOC110524640 LOC106560363 coding downstream 767198 79956565 ~ 79979785 (+)
G443762 NA non-coding upstream 2785 79153862 ~ 79154226 (+)
G443761 NA non-coding upstream 3188 79153583 ~ 79153823 (+)
G443735 NA non-coding upstream 31183 79096270 ~ 79125828 (+)
G443737 NA non-coding upstream 57770 79098629 ~ 79099241 (+)
G443703 NA non-coding upstream 152495 79003960 ~ 79004516 (+)
G443790 NA non-coding downstream 12100 79201467 ~ 79201623 (+)
G443789 NA non-coding downstream 13650 79203017 ~ 79203271 (+)
G444166 NA non-coding downstream 63141 79252508 ~ 79252863 (+)
G444168 NA non-coding downstream 65984 79255351 ~ 79256003 (+)
LOC110524622 LOC106560333 other upstream 898555 78245839 ~ 78288092 (+)
G442273 NA other upstream 1573784 77558330 ~ 77583227 (+)
G441903 NA other upstream 1888245 77268212 ~ 77268766 (+)
LOC110524571 LOC106560285 other upstream 3978724 75161317 ~ 75178287 (+)
G438719 NA other upstream 4380542 74772009 ~ 74776469 (+)
G445204 NA other downstream 1027111 80216478 ~ 80217090 (+)
G445211 NA other downstream 1045513 80234880 ~ 80235428 (+)
G446381 NA other downstream 2706437 81895804 ~ 81897781 (+)
G447001 NA other downstream 3234831 82424198 ~ 82442223 (+)
G447020 NA other downstream 3263239 82452606 ~ 82458383 (+)

Expression


Co-expression Network