G391450


Basic Information

Item Value
gene id G391450
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 33063079 ~ 33064173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU444348
TCTCAGGATGCCAACACCACCACCTGATGGGTGCCCTACCTATGCGCAGAGGCCTACAGTGGGGCAGGCTGCAGCCCTGTGAAGCCTAATGATAAATCTAACCTTTGTTATTTGGTTATCTAAAACGTTATATTGTACTGGGGGAGGGGCACAGTGTGGCACACTTGCTAACCCTTGACAGTAAAGCTGTTGTTTGTATAAGGTAGTCGGACAAGGGCAGTAAGATCAGAAAACCAAGCATTTTTTATTGATTCAATGTACTGTATGATTTGATACCTGGGTCCCATTCGGCAGGATGGAGAGGACTGTTTCATCATGGGAGACACCTTTACAGCATTGCTGGGAGAGTCTGCCTTCACTTTAGTCACTACCATGAACCAACCTGACGTGTTCCTACGCATGAGCTTAGCTACAGAATACATTTTGTTTTCACAAGATCTGAAAATAACATTTTCAGGGTGTGATTAGCAAGACACACAGTCTACATGACATTAGCAAGCTAGCTTGTTTACAACGAGCAAAAAAGTTCTACGTGACTCGGGCTGCCGCATCACAATACCTGGTACTCTGGTCTTGGACCCATTACCCACTCACGCAGGTACAAGATTTGTTTCAGCCAGGGTCAATTTGCATTTCTCACATGCTTTATAGTGCGGATCAGGGTACCAAATGCCCCAGGATCCAGGTCATAAGGGGATATGTGAAAGCGCCCT

Function

NR:

description
PREDICTED: apical endosomal glycoprotein isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU444348 True 713 lncRNA 0.46 2 33063079 33064173

Neighbor

gene id symbol gene type direction distance location
LOC110523632 LOC106565566 coding upstream 99110 32909966 ~ 32963969 (+)
LOC110523631 LOC106565876 coding upstream 159316 32900863 ~ 32903763 (+)
LOC110522915 NA coding upstream 166269 32885656 ~ 32896810 (+)
LOC110523629 LOC107720969 coding upstream 178980 32762181 ~ 32884099 (+)
LOC110523627 LOC106565641 coding upstream 326526 32734905 ~ 32736553 (+)
tsc1b LOC106565454 coding downstream 162197 33226370 ~ 33259075 (+)
LOC110523644 LOC106565434 coding downstream 353245 33417418 ~ 33446506 (+)
LOC110523645 LOC106565424 coding downstream 425950 33490123 ~ 33492398 (+)
LOC100136128 LOC106565394 coding downstream 576315 33640488 ~ 33799714 (+)
LOC110523646 LOC106565369 coding downstream 766533 33830706 ~ 33844121 (+)
G391436 NA non-coding upstream 16654 33040578 ~ 33046425 (+)
G391435 LOC106565542 non-coding upstream 36741 33024322 ~ 33026338 (+)
G391401 LOC106565553 non-coding upstream 82064 32980162 ~ 32981015 (+)
G390943 NA non-coding upstream 103367 32958841 ~ 32959712 (+)
G391497 NA non-coding downstream 71070 33135243 ~ 33135607 (+)
G391525 NA non-coding downstream 129097 33193270 ~ 33199567 (+)
G391569 NA non-coding downstream 229519 33293692 ~ 33294263 (+)
G391772 NA non-coding downstream 273581 33337754 ~ 33338043 (+)
G391801 NA non-coding downstream 292670 33356843 ~ 33357184 (+)
G390393 NA other upstream 842546 32220181 ~ 32220533 (+)
G390184 NA other upstream 1102334 31960355 ~ 31960745 (+)
G388019 NA other upstream 2775255 30286951 ~ 30287824 (+)
G387516 NA other upstream 3164945 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 3316885 29741800 ~ 29763439 (+)
G391513 LOC100136561 other downstream 94653 33158826 ~ 33162980 (+)
G391805 NA other downstream 296784 33360957 ~ 33361341 (+)
G392776 NA other downstream 1083301 34147474 ~ 34150795 (+)
G394882 NA other downstream 2840939 35905112 ~ 35905781 (+)
G394910 NA other downstream 2902764 35966937 ~ 36004829 (+)

Expression


Co-expression Network