XLOC_023290 (si:dkey-197c15.6)


Basic Information

Item Value
gene id XLOC_023290
gene name si:dkey-197c15.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 7820042 ~ 7826489 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046071
CGCGAAGTTTTCTTGTAGACAGTAATCGAGATAACGTTAGTCAACTGAAACACAACCCAGAGGAGGACTTCAACAGTTTCCCCCCCTGCTGCTCATAATGTCTTTAGCTGGTGCGCTGTGGTTTGCAGTTCAGGATGATTTATTAACAAATGGTGTATGTAACAACACAACATCATCCAACATCAGCAACAAAAAACCAGACAAACAGCCCAGCACCAGCGAGCCCATCTCTGCTCCCGAGATCCACTCTGTGCTGGGCGGACTGGACGATCACTTCCTTTCACGCTGGTTACATCTCAACCGACAGTGTCTGCGGTTCATCATCGATTTCATCCAGGCCCGTTTTAAAAAAGACATATTTGCGTCCAGCCACAAGCCGAACTTGTCCGAGGCCAACATTCTGGCCGCACTTGCCTACTACGCACAGGGGTCTCTGCCAAATAAAGTCACAGACCGTCTGAGAATCGATCAGAAAACAGCATGCGAGGCGGTGAAGGCCACCACCAAACTCTTATCAGACTTAACCCCCGAATTCATCACATTCCCGAACAGTTATAACGACCGCATGGGTGCCGCACAAGCCTTCAAGAACCTGAGCGGCATCCCGCATGTGGTGGGAGTGTTGGGGTATTTGCACATAAGGGTGAGACCTCCCGTCTTGGAGGAACGCATGTATGTGAATACTCTGGGTTATCATTCAATCATGGTGCAGGTCATATTCGACGCGGACGGGAATCTCTTTAGTGTGGAGCAGTGCTGTCCTGGGGGAACTCCTGAACACTCTGTTTGGGAAAACTCGGACATTGGCAGACAGTTCAGCATATTTCAACACGGGCACACGTGGATCATTGGTAGCCCATCTCTTCTAGGATGTGGACATGTTTTGACCCCAGTGGAGACCATTCGTATAAAAAGCAACGCGGCTGTGCAATTTAACAAAGCACACGCTCTGCTATACAACAGTTCGCAGCATGTCTTTGGTAGTTTGAAAAGCCGTTTCCAATGCCTGCAAGACTTCGGCTCCATCCAGTCACCCGAGTCTGTGGCATGCATGATCAGAGCCTGCTGCGTCCTGCACAACATCAGCAAGAAGTTCTCCGTGCCGTTACCTGCCGATTTTAGCTTGGAGCCGCTCCATCCGCCGTCAGAAGTGCTCAACATCATGGCAGAGCAGCAGTTTGACTACATGGAAGACACTAAAGATGAAATgatagaaatgttttttaacaCTACAGAAAACGAGGATGACTCCGAGGCGACCAGATCTATGAGAGAATACTTATGATCGCAAAAGAAAAGTCTGAAACCGTTAGTATTTCAACTATGCTGAGTGAAATAAACAGACATATGCATGCTGATGCCAGCCGATTGGTTATATACACAAGCTTTATTAATTACACAGTTGATTCAAATAAGTTAATGCTAATTCGCTAACATTCATCAACaagtaatatgaataaaaaaacgtATGGAAGGCTATAAAATTAGCTCATTCAATACTACAAGTTTGTTACAAGAAGAAGTACTCCAGTAGTACCATGGGTTCAGTGATGCTAACAATAGGTGCTGCTTTGGATTTAAATACAGATTGGGTGAGTTTTGACTAGGCGAAATGGAACGGCTGAAGATAGTACATTTCCTGTGTCAATAGTACAGTTGTCAGCCATGAAAGGCAGTATTAGAAATATAGAGTTTATTACCCCATATGTAATGCAAAGTTATTTTTCACCCAACTTGTGTATACCAATTTCAAAGAACTGTGATGGATGCATCCATAATGTTGTTCTTACCACATGTTGTTCACTTTTTCTTTTACACATTTATGTTGATTACTTGCTTTGAAGACATAACATGTTTGTGCAATACAGTAATACATATGTA

Function

symbol description
si:dkey-197c15.6 Predicted to enable hydrolase activity and metal ion binding activity. Predicted to be located in cytoplasm and nucleus.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-147 Predicted to enable hydrolase activity and metal ion binding activity. Predicted to be located in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000079401

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046071 True 1881 mRNA 0.44 2 7820042 7826489

Neighbor

gene id symbol gene type direction distance location
XLOC_023289 rpgrip1 coding downstream 42653 7748751 ~ 7777389 (-)
XLOC_023288 ptprh coding downstream 91633 7714014 ~ 7728409 (-)
XLOC_023287 syt5b coding downstream 120686 7686464 ~ 7699356 (-)
XLOC_023286 atp6v0a1b coding downstream 187855 7596009 ~ 7632187 (-)
XLOC_023285 galnt11 coding downstream 232641 7554582 ~ 7587401 (-)
XLOC_023291 txndc5 coding upstream 114884 7941373 ~ 7957581 (-)
XLOC_023292 CR376854.1 coding upstream 140995 7967484 ~ 7967600 (-)
XLOC_023293 bloc1s5 coding upstream 161969 7988458 ~ 7995960 (-)
XLOC_023294 CABZ01077956.1 coding upstream 307237 8133726 ~ 8214253 (-)
XLOC_023295 eef1e1 coding upstream 417596 8244085 ~ 8261786 (-)
XLOC_023665 dre-mir-735 misc upstream 30351472 38177961 ~ 38178027 (-)
XLOC_023283 BX890551.1 non-coding downstream 1047665 6771308 ~ 6772377 (-)
XLOC_023272 NA non-coding downstream 1718922 6088272 ~ 6101120 (-)
XLOC_023263 NA non-coding downstream 1982644 5795528 ~ 5837398 (-)
XLOC_023303 CR318624.1 non-coding upstream 1278124 9104613 ~ 9126025 (-)
XLOC_023304 NA non-coding upstream 1426245 9252734 ~ 9286642 (-)
XLOC_023305 NA non-coding upstream 1448606 9275095 ~ 9281017 (-)
XLOC_023307 NA non-coding upstream 1681185 9507674 ~ 9612356 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000327_01607238_01612577 NA coding CI01000327 null 1607022 ~ 1613483 (-)