XLOC_023293 (bloc1s5)


Basic Information

Item Value
gene id XLOC_023293
gene name bloc1s5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 7988458 ~ 7995960 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046074
AGACCCCCTAATTCCCCAGAgccctaagcagctgcttacctcgcttattgatTAAGTACGTCCCTTATAATAATTTTACATGACCTCAAACAGGTCTTTCTGTAACCTTTTTCCTATATCGGGCTTTTGTGTCatgtattaacttttattttgaagtttggacttttattttgcttGCATCTTCTGTTATCGTCTGCACGTGATTTTGTTGTGCGGTGTACTTCCTTATTTTTCTGTAAAGAAGCATTTCGCCTTCCATACCACAATTTTAGAAGTTGAGGATAGGAAACATATGGCGGAATAATATATATCATCGCATAAAGTCATAAAGCTTATCAACCAGCATCGTGATGATGGAGAAGATAATTAAGGATGTTGGTGATATTCAGTCCAGACTGATTGATCACAGGCCGGTCCTGCAGGGAGAAATCAGATACTTCATTAGAGAGTTTGAGGAGAAACGTGCTTTCAGAGAATGCCGCTTGCTTGAAAATCTGAATAAGATGACGTCAGACACCAATGAGCATGATTTGCCACGCTGCACAGAGAGTATGCACGAGAAACTGTGTGACGCTCTCACAAGACTAGAAGCAGCAAATCATATGGCTCAGAGGATCCAGCAGAGGGAGCTAGAGGCTGAACAGAGCACACATCTGCAGGTGTGTGCAGAGATGCGGAAGCGGGACTGGGAAGAGTTCCAGAAAGAGCAGTGCCGTCTGAAGGAGCAGGTGGATGAGGAGCATGCTAAAGCTGTAGGCAGACTCAGTGCTCAGTATGACGAAATGAAGAAAGACCTGGCCAAACACAGCAGCTTCTGAACTTTCCCCTGTGAAagttgttaaatatatatttagttttaaattgaaactaaataataattttgaatgatgtgtgaatattatttattttaatgttcctTTTGTGCTGCATTATTGTTAAAGTCATAAtaatccattttttttatttttttgcattgaagCCTCTAACATCTTGTTCAGGTTAAATATAAACTCCAAATTTGAGTCTTTGAGTGTGAGTCTTGCATTCATGAGATCTGTCAGTGCCTATAAAAGCATCCATCATGCCACATATTTGCCTCAAATCCCTTAGTTTAAATCTAATCATAGGTATTTCCACATCAGACAGGAACTGTTAATATGTGACCATTTTTTTCCTACATGTGTTTGTAAAATATCCCACATTAAACATGTCTGAATGTGTTTAAGACCATCTGCACCTGCTTTAGATTGAGAGAGATCTTAGCCAGAAATCTATCCTCTCTCCTCACATGTCCCTGTGTTTTCCACACAATAGTAAAGGTCATACGGCACATTCAATCTGAGCTACGTTTGACACGGGCGGAGCATTTGAGTTGTCAATTCTTCAGCCATAGCGTGTCTTCTGCATTTGTGCAGTTAATGTTAGGATAACAAATTGACTATCTGATAAAAAatggaaagtgaaagtgaaagtggtatgaaaaagtatttgcccccttactgatttctttttttgcatgtttgtcacactttaatgtatCAGATCATCAAACTAGTTTAAGTTTTAGTCAAAGATAGTACAAGTAAACACGTTATCCATGtttgaaatgaatgtttttattattaagggaaaaggGCCACCCTTAGCAGCAACAATTGCTATCAAGCATTTTCGGTGACTTGAGATGAGTCTGTTACAGCTCtgtgaaggaattttggcccacttATCTTTGCACAATTGTTTTAATTCGCTCACATTGGAGGGTTTTTGAGCATTAACCACCTTTTTTAAGTtcttgcactgcaaaaaatgcttttcttgcttagattttttgtcttgcttctagtctaaatatctaaaatttcttatatcaagaagcattttttagacaagcaaaacatattgccttgttttgagaaataatatgccaatattaagtcagtttttccttaaaacaagcaaaataatctgccaattgggtaagcaaattaatcttgttttttcgtttaacgtaagattattttgcttaccccattggcagattattttgcttgttttaaggaaaaactcacttaatattggcataatatttctcaaaacaaggcaatatgttttgcttgtttagaaaattctacttgatttaggaacttttagatatttggactagaaacaagacaaaaaatctaagtaagaaaagcattttttgcatctCAATTGAATTCAGGTCAGGtttttgactaggccactccaaagtctggTCTTTAGTAGCACTATAGTCTTCATTTTGGATCATTGTTCTGCTGCAATATTTtgctgagatacaactatttgacatcctgaaatctgagggttcaaTCAAAATTCTGACAAAGCCACCTTTAAAGTTGtacaaattaagttcttaatatatattactaataaaaatatttagtttttttatatatttacactaataaCATTTTCAggatatgaatatttattatcacactttattttgatggtccatttgttcaatttaagttgcattgcaactagaTGTCAGGTTGTGGttgtggttagggttagtgtaagttggcatgtacttgcaaagtttcttatgtctgttgaaggagcagtatcaacagatattaagcagacagtctactaatactcaaatggacaatcaaagtaaagtgttaccttgttATTTATATGGAAAATGATGTTTACTTCATAGTCCATCTGCAGAAGAATTTGGAAGCTGAAGGATCTGCAGGAGATTGAGGATTTTTCTGAAGAGCAGCAGTCAGTTTGACTGTTTAAAACAAACGTGACTCGTGAACAACCATCACAAAGCAGAAAAAGCACTTGTAAATCATCAGGAAAACCAAGAAGTAAGCTTTTGCGTGGggttattttaatagtttcagcTAGATTTTTGTCTAGTGAGCTATATATGCAAACATTTATGcaatatatatgcatacacaAAATTATTCACACCTTAACAAATTCTTGAAGCGGAAATTTTGAGCACAACTACAtatagtcatttttaaaaatgtaccatTTAGCTTACAGAATGGCCATAGTATATTCAATagtatttaacataaaataaataataaatttaacagtattttataCATTGCATTCCATTACAATCCAAATACAGTAGATCATCAAAATATTACTATTTTGCtagtttgtgttgtttgttttgacgCAATAACTTCCATTTTGTCCTGAAGGAATAGTGTATGacattaataaaacttaaaaagcAGCTTAACTGGGCTTGGAATTTACCTGTCTTCGGCTTTGTCATTCTTTATATCCGAGGTTTCTCTCAGACCAGGGCTATGGTGTTCCCACCAGCATTTACATGTTGTGTGCGAGAGATTTGCAGAGGCAGATATTTTGAGGTTGTCTCCTCCATGGCAAATCCGAGTCAGTCATTGGCAGCTAATGAGGAGTGACACCGCGGAAACATGGACCTGCGTCGCCAACAAGGCACCTTTCATCTGCGCCTGTTTGCTTTTGCAGCTCTGCTTGAGAAAAGAAAATAGACAGAAAATACtggaaagattaaaaaaaaatctattgcatgaaCAAACCCCAAGAGTGTAATTATGGCCCTTTTAGCTATTTGATATTTCTGTCAGCCTATTTAAACACCTCTATGGAAATTATGTTGTTGGAGCAACTGTATGCTACACCATTACTGTACAGCGACATGTTGGAATTTATGTATTATTGATGCACCTTAAATTCAGGTCATATTTCACAATATCAATgcttaaagaaagaataaaacCATGTGTTGTGCTGTAGTTTCAAGTCAAATTCCAGACATGGTATCTTTTTAGGGCTctgttaaaaagacaaaaaaacattgaaaaatcaaggaaaattcatttttttgtagttttattgAACTTTCTAGAAAATTTTAAAACTAAACAGTTTAAAACTACCATTATTGCCCAATAAAACAATCATTTATGGTGGTTATGTCAAATAAAGTCCACTTTATCTCTACTTTTACAAtctaaattgtgtcaaagcagtttgcattgataaagaaaattaaaatccataacaatattttaaatcgGTGGAACATTCCAGCATATCAGGCAGCCAGGAGAGCAGCGATAGTACACTGGCGTAGTTCTAGTTAAATTAAACCAATTCAGGTCCATTTAATACAAGTGTCAATGTTGAAGTTCGGTTCAGTTTAATACAATTGTCACTGTTGAAGGATGATTTACCAAACAGCAGCTCCACCAGCCCCATCCATGCAAGCTAGAGCTGACAAGAGGTGAAAGTGGAGAACAAACCTTGGGAGGAACCAGGATTAGTTAGTGTTACCAGTTCTCCTCTGGTCAAATTTAAAGTGGCACAGCTGTACTCTAAGATATCACAGGGTTTGAAAAAGATGAGCATCCATCGTAGAGGAGGGGCAGGTAACCAGGGAGGTGTTCAGACCGGCTGTCATCTAAAGAGAGTGCTGTAACTGGTTATCAGGCAGTCACAAATTAAAAATGGGTTAGGGGATTTTGTGAACGAATGTGAAGAGGGTGGGGGtggtcgcggacgaaagtgaagagagaAGGGGTGAGGTTGGTGTCAAGGGGGGAGGTGTGTCGCGGACGCAAGAGAAGAGCAGTGTGGAGGTATCGGGTGTCATGGTGAGGGGTGTCGCAGCCAAACATAAAAGGCAGGGAGGTGGTCGCGGACGAAAGTAAAGTGCGATGGAGGTGGGGTGTctcagatgaaagtgaagagtgggg

Function

symbol description
bloc1s5 Predicted to be located in transport vesicle. Predicted to be part of BLOC-1 complex. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome. Orthologous to human BLOC1S5 (biogenesis of lysosomal organelles complex 1 subunit 5).

GO:

id name namespace
GO:0030133 transport vesicle cellular_component
GO:0031083 BLOC-1 complex cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-3502 Predicted to be located in transport vesicle. Predicted to be part of BLOC-1 complex. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome. Orthologous to human BLOC1S5 (biogenesis of lysosomal organelles complex 1 subunit 5).

Ensembl:

ensembl_id ENSDARG00000111747

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046074 True 4775 mRNA 0.37 5 7988458 7995960

Neighbor

gene id symbol gene type direction distance location
XLOC_023292 CR376854.1 coding downstream 20858 7967484 ~ 7967600 (-)
XLOC_023291 txndc5 coding downstream 30877 7941373 ~ 7957581 (-)
XLOC_023290 si:dkey-197c15.6 coding downstream 161969 7820042 ~ 7826489 (-)
XLOC_023289 rpgrip1 coding downstream 211069 7748751 ~ 7777389 (-)
XLOC_023288 ptprh coding downstream 260049 7714014 ~ 7728409 (-)
XLOC_023294 CABZ01077956.1 coding upstream 137766 8133726 ~ 8214253 (-)
XLOC_023295 eef1e1 coding upstream 248125 8244085 ~ 8261786 (-)
XLOC_023296 slc35b3 coding upstream 397330 8393290 ~ 8412526 (-)
XLOC_023297 tfap2a coding upstream 725716 8721676 ~ 8732519 (-)
XLOC_023298 mak coding upstream 746319 8742279 ~ 8777781 (-)
XLOC_023665 dre-mir-735 misc upstream 30182001 38177961 ~ 38178027 (-)
XLOC_023283 BX890551.1 non-coding downstream 1216081 6771308 ~ 6772377 (-)
XLOC_023272 NA non-coding downstream 1887338 6088272 ~ 6101120 (-)
XLOC_023263 NA non-coding downstream 2151060 5795528 ~ 5837398 (-)
XLOC_023303 CR318624.1 non-coding upstream 1108653 9104613 ~ 9126025 (-)
XLOC_023304 NA non-coding upstream 1256774 9252734 ~ 9286642 (-)
XLOC_023305 NA non-coding upstream 1279135 9275095 ~ 9281017 (-)
XLOC_023307 NA non-coding upstream 1511714 9507674 ~ 9612356 (-)
XLOC_023309 BX649325.1 non-coding upstream 1716535 9712495 ~ 9712610 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000327_01752247_01756786 NA coding CI01000327 null 1751921 ~ 1756786 (-)