G422365


Basic Information

Item Value
gene id G422365
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60180660 ~ 60182387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU478608
ACCACCAGCGAGCAACAGTAACAACCTTAGTAAAtcgaatcaaactttatttgtcacatgagccaaatacaagtgtagaccttaccgtgaaatgcttacttacaagcccttaaaacttcttcaggattggtgggtcccctgcgggacagttgagctaacgtagcctaatgcaattagcatgaggttgtaagtaacaagaacatttcccaggacatagacatatctgatactggcagaaagcttaatttcttgttaatctaactgcactgtccaatttactgtAGCTATTACCGTGAAATAATAGCATGCTATTTTTGAGGAGAGTACACAGTTTTGAACataaaaagttattaataaacaaattaggcacatttgggcagtcttgatacaaactttgaacagaaatgcaatggttcattggatcagtctaaaactttgcgcgcacactgctgccatctagtgggcaatatctaaattgcgcctgggctgcaataatacattatggcctttctctatTTCAAATATGACAgtacaaacaaatacaaaaatacattttttttcctttgtattatattttaccagatctaatgtgttatattctcctacattcctttcacatttccacaaacttcaaagtgtttcctttcaaatggtacttgcttcagggcctgagatacaggtagttagatttgggtatgtcatctTAGGCGAAAACTGAAAAAAGGGGCCGAtcctttaaccaacagtgcagttaagaaaatatttaccaaataaactaaagtaaagaaataataaaaagtaaaaagtaatagttcgttggtgatgtggacaccaagaaacttgaaactctcgacccgtctagagccctgtcgatgttaatgggggcatgTTTGGCCTGCATATTCCtgtagctcctttgtcttgctcacattgagggagaggttgttgtcctggcaccacactgcccgttctctgacctccctataggctgtctcatcattttcggtgaccaggcctaccactgttgtgtcggcAGCAAACtgttgttggagtcgtgttttGTCTGATCGTTAACTGGGCTGGCAGAATGGATTGTGTGAAGCGCAGGGACACCTATGAAGAAATGTTGAAGTCTTACTCTCAGATCTGCAAGGACTACCATGTCAAAGGTTTGGGCCACTTGGTGTATTATGACACGCAGAAATAGCACCAAAATTGGCTACAATAATGTAGGCCACCAAATATGAATTAGTGATTTTAcctataaaatgtgcagttttgaggtagagtgtaattggcatgctgactgcaggaatgtccaccagagctgttgcaatataattgaatgttaaatgttctaccataaactgcctcccaCTGTCgatttagagaatttgtcagtacgtccaaccggcaaAACAACGTAtaacgtcagcccaggacctccacattcggcttTTTGACCTGTGGGGGTGGGCCAGGCTCCCCAATTGGTGGGCCTAGCTGCCAAGTGGAAGGCCCATGTTCTCCAAGGCCCACCATGGCtgagcccctgcccagtcatgtgaaacccacagattagggcctaattgattgatttccttaaatTAATTGAGtaaattattttacatttttgcatgttgcgtttgaattttagttcagtatagctggctagctagtgaAAGAATAAAAAGCTAGTTTGGTAAATAATCATAGTTTGACTGTTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478608 True 1728 lncRNA 0.41 1 60180660 60182387

Neighbor

gene id symbol gene type direction distance location
LOC110524206 ap1m1 coding downstream 46388 60116530 ~ 60134272 (-)
klf2a LOC106613686 coding downstream 199041 59979007 ~ 59981619 (-)
LOC118964630 NA coding downstream 266384 59904845 ~ 59914276 (-)
LOC110524194 LOC106613679 coding downstream 379456 59787744 ~ 59801204 (-)
LOC110524193 LOC106613676 coding downstream 404004 59772761 ~ 59776656 (-)
LOC110524209 LOC106613694 coding upstream 99987 60282374 ~ 60289431 (-)
lpl lpl coding upstream 115817 60298204 ~ 60306640 (-)
LOC110524214 LOC106613699 coding upstream 212637 60395024 ~ 60398862 (-)
LOC118964632 NA coding upstream 231776 60414163 ~ 60426534 (-)
ccl44 LOC106613702 coding upstream 277460 60459847 ~ 60462194 (-)
G422384 NA non-coding downstream 29969 60150382 ~ 60150691 (-)
G422363 LOC106613690 non-coding downstream 45070 60134816 ~ 60135590 (-)
G422360 NA non-coding downstream 67087 60112935 ~ 60113573 (-)
G422359 NA non-coding downstream 68824 60111620 ~ 60111836 (-)
G422357 NA non-coding downstream 69686 60110676 ~ 60110974 (-)
G422388 NA non-coding upstream 237 60182624 ~ 60182860 (-)
G422415 NA non-coding upstream 34984 60217371 ~ 60217664 (-)
G422418 NA non-coding upstream 37505 60219892 ~ 60220214 (-)
G422466 NA non-coding upstream 96545 60278932 ~ 60279141 (-)
G422468 NA non-coding upstream 97741 60280128 ~ 60280446 (-)
G422347 NA other downstream 79604 60100765 ~ 60101056 (-)
lsg1 lsg1 other downstream 1042403 59131152 ~ 59138429 (-)
G420982 LOC106613655 other downstream 1144361 59026103 ~ 59036299 (-)
G420421 NA other downstream 1766517 58413128 ~ 58414143 (-)
G420193 NA other downstream 2066600 58112387 ~ 58114060 (-)
LOC110524239 LOC106573579 other upstream 876607 61058949 ~ 61081864 (-)
G424474 NA other upstream 1434483 61616870 ~ 61617244 (-)
G424499 LOC106613729 other upstream 1467580 61649967 ~ 61651775 (-)
G424502 NA other upstream 1476646 61659033 ~ 61659585 (-)
G424649 NA other upstream 1705811 61888198 ~ 61927422 (-)

Expression


Co-expression Network