XLOC_023584 (si:ch1073-406l10.2)


Basic Information

Item Value
gene id XLOC_023584
gene name si:ch1073-406l10.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 33288455 ~ 33291784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046621
AACAGAAGGCAGTCCTCCAGGAATGCGGCTGTTTTTCAGAGAGCGCGCGCGGCTCGTGCTCAGACTGGTTGAAGATGCCTGATCTGCCGTTTGCGCTGCTCGTTTTTGGAGTCCTGCTGAGCTCCGGAGGAGCTCAAAACTCCCTCAGCAAACTGCCGGACACCGTCAAAAAAGGTGTAGACCTCGCGCTGAAAAATGTCAACTCTCACGAAGGAGTCCAGcagcattttctcttttttaaaagcCTTCAGCAGTCAAAAATTGAGGCAGGGTTTGATGTAACCTTCATCTACCACAAATTTTATCTGAAAGCCACAAAGTGCAAAAGAGGAACGGAGAACGCTGACACCACCACATGTGCCTTCAGGAATGATCGGCCTCTGATTGATTGTGCCATCTGCTATAAAACCTACGCTGGAAAGATTGAACCAGAACCCATACCCTATGTGAGCTGTGTGCATAAACCAGCTCTTACTGAGGATATGACGAAAGAGCGACTCGAGCGCTGTAATAAGATGGGTTACAGCAGCGGATCCCCAACACTGCTGGCTGTTGCAACAGAATGAGAATACTGGATGTTCAGATACATAAAAATCTCTCCTAGTCAGTCTTTTGTGccaaatatataacatttaaacatcTAATCAATAATCCAAATTCTTTTTGGTCCTTACTAAAACtcaatttaaaagagaaacatacaaTTACATGGTTACATTTTGAATGATAAGAATTTAGGTAGTCTTTTAAGGTATATCTATTTGTAGGTAAACATTAGTATATTATATATTGATAGTCTGTCTAAAGAATATCCATATAATTCCATAGTGAATGACTTATTGCAAATTCATTAGAATAAATGTgtcttaatatattttatacatacaaGCTTACAGTCACAATTGCTTTTTTGTCTCATTAATAGAGCCTATGCATTGTGTTTTAATAGTGTCTCATGAACTGACATTACAATTCATTTGTTACATTagtaaacatgaactaataataaaataaatggttgcatgaacaaataaacaatcatTTTCAAACATTGTTAATTTGAACTCATAAACAGTTGTTGTACATTGTTAGtttctagatttatttttttaaattcattgtttattaaaatttaagcTGAATTAAAGTACAAAGCAACTAATGTA

Function

symbol description
si:ch1073-406l10.2 Predicted to enable signaling receptor binding activity. Predicted to act upstream of or within several processes, including chemotaxis; inflammatory response; and regulation of lipid catabolic process. Predicted to be located in extracellular region.

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0050994 regulation of lipid catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-315 Predicted to enable signaling receptor binding activity. Predicted to act upstream of or within several processes, including chemotaxis; inflammatory response; and regulation of lipid catabolic process. Predicted to be located in extracellular region.

Ensembl:

ensembl_id ENSDARG00000089645

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046621 True 1166 mRNA 0.37 4 33288455 33291784

Neighbor

gene id symbol gene type direction distance location
XLOC_023583 zgc:195173 coding downstream 3452 33279654 ~ 33285003 (-)
XLOC_023582 nrbp2b coding downstream 12316 33226331 ~ 33276139 (-)
XLOC_023581 NA coding downstream 67280 32707441 ~ 33221175 (-)
XLOC_023580 ca2 coding downstream 623172 32650227 ~ 32665283 (-)
XLOC_023579 rdh12l coding downstream 705575 32573480 ~ 32582880 (-)
XLOC_023585 slc4a2b coding upstream 9345 33301129 ~ 33390193 (-)
XLOC_023586 si:ch73-173p19.2 coding upstream 147459 33439243 ~ 33461313 (-)
XLOC_023587 NA coding upstream 258078 33549862 ~ 33670492 (-)
XLOC_023588 LO018309.1 coding upstream 260414 33552198 ~ 33578392 (-)
XLOC_023589 si:dkeyp-87a6.2 coding upstream 398526 33690310 ~ 33693070 (-)
XLOC_023665 dre-mir-735 misc upstream 4886177 38177961 ~ 38178027 (-)
XLOC_023575 NA non-coding downstream 880051 32406894 ~ 32408404 (-)
XLOC_023574 NA non-coding downstream 925093 32362433 ~ 32363362 (-)
XLOC_023567 CT737162.3 non-coding downstream 1501878 31786463 ~ 31786577 (-)
XLOC_023566 NA non-coding downstream 1532104 31755247 ~ 31756351 (-)
XLOC_023594 NA non-coding upstream 543040 33834824 ~ 33839361 (-)
XLOC_023596 NA non-coding upstream 765495 34057279 ~ 34069758 (-)
XLOC_023597 CT583690.1 non-coding upstream 820972 34112756 ~ 34115514 (-)
XLOC_023600 NA non-coding upstream 1571256 34863040 ~ 34863601 (-)

Expression


Co-expression Network