XLOC_023586 (si:ch73-173p19.2)


Basic Information

Item Value
gene id XLOC_023586
gene name si:ch73-173p19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 33439243 ~ 33461313 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046624
ATCAATGAACTCGGACATCTTGGACTGGTTCAGTTTAAAGATCTGAATCCTTGTGCGACAGCATTTCAGAGGCGATTTGTGAAGGAGGTGAAGAAATGTGAACAAATGGAGAGGATTTTGAGGTATCTTGAGAAGGAGATGGTGAAATCTAACATTGTAATTACTGCAACAAAGGAGAAGGAGATGGTTCCATGTGCTAGAGACGTGCTGGAGCTAGAGTCTACATTTGAGAAGTTGGAGCAGGAGCTGCGAGAAATCAACCATAATCATGACACACTCAGACAGAACCTGATCGAGCTGATGGACATTGACTCTCTGCTGAGGATGACCGAAGACTTCTTTGAAGagGCCGAGTCTCTGCTGACCTTCTCTGAGGCTTCGTCTTATGACTCGGTGTCGATGACCATTTCATCATTCATTACCAGCCGCAGAAACAGCAGCTCCAGCACCTCTGGGCCTCTACATCTAGGCTTTATTGCAGGTGTTATCAAACAAGAAAGATTTCCTGCCTTTGAAAAGGTTCTCTGGCGACTTTTTCATGGCAATTTTGTCCTTCGGCATGCAGAGATACAGACCACAGAAGAACTTGAAGCAGTGcggGGAGCTGTGAAGAAAGATGCGTTCATTATATTTGTCCAAGGAGATCATGTGCGAGAAAAGATCAGAAAAGTTTGTGAAGGGTTTCGTGCCAGCTTGTACTCGTGCCCCAAAACTTTATACGAACGCAAGGAGATGAGCAACAGCATAATGACACGAATGGAAGATCTCCGACTGGTCCTGAGAAGAACAGAAGAGTATCGTGCTGGAGTTTTGAGCCGAGCGGCGGAGCACGTGCAGGAGTGGGGCAGTAAAGTCAAGAAGATGAAGGCCATTTACTACACACTCAATCTCTGCAACATAGACATCACACAGAAGCTGATCGTTGCAGAGATCTGGTGTCCGGTGTCAGATCTCACTGTAGTTCAAAACGCACTCATTAAGGGATCAGAGCAAAGTGGTTCCAGTGTGACTCCAGTTCTGAATCGCATTCAAACCAAGCAGACTCCTCCTACTTTCAACAGAACCAACTCATTTACTGAAGGATTCCAGGCTATTATTGATGCCTATGGGGTCGGAACCTATCAGGAGATTAACCCAGCTCCATACACTATCATAACCTTCCCCTTCTTGTTTGCGGTGATGTTTGGAGACTGTGGTCACGGTCTGCTCATGGCACTGTTTTCTGTCTGGCTCATCACACAGGCCGACTATATAAGAAAATGGAAAAACGAGCTTACAGATGTCCTGGTCGGTGGGCGTTTCATTATTTTGCTCATGGGATTGTTTTCCATATACACTGGGCTCATTTATAACGACTGCTTCTCCAAGTCCTTCAACATTTTCGGTTCTTCCTGGTGTGTTCGGCCCATGTTTCACCCTCACGGGTCTTGGCAGTACGTATTTTTTTCTGGTCATCCGTATGTGTTTGGAATTGACCCGATTTGGAATATAGCATCAAATAAGCTGTCCTTTCTCAACTCCTTTAAGATGAAAATGTCTGTCATCTTGGGTGTGGCTCATATGCTGTTTGGAGTGACCCTGAGTTTGGTCAACtttctACATTTCCGAAAGTTCCAGGACATTTTGCTTCAGTTTGTCCCTCAGCTTGTCTTCATGCTGTGTCTCTTTGGATATCTGATCTTCCTCATCCTCTACAAGTGGAGCGTCAGCCTTAGCTCTGAAATGGCTCCCAGTATTCTGCTGCTCTTCATCAGCATGATGCTGTTCGATTACCAGCCTGACCACAAGCTTCTGTATGGAGGACAGAAAGCTGTTCAGATCTGCTTGGTTGTGACGGCTGTGCTGATGGTTCCTGTACTGCTGCTGGTGAAACCTTTTCTCATCTACAGAAGCCGTATGAAAACCAGACATCAGGTTTTTggaaacagtctggatgatcaGCAGTGTACAGATAAACGTTCGTCATTCGCGCGTCATCAGAAAGATGAAACGGTAAGCATGGGGGATGTTTTCGTATATCAGGCCATTCACACTATCGAGTACTGCTTGGGCTGCATCTCCAACACAGCCTCGTATCTGCGGCTTTGGGCACTCAGCCTGGCTCATGCAGAGCTGTCGGAGGTTCTTTGGCGGATGGTGCTTCAGGCGGGTTTGAAACTTTCCTTCGGTTTGGGCTCACTCATGCTGGCGCTGCTCTTTGCTGCTTTCGCCGTTCTCACCGTCACTGTTCTTCTGGTAATGGAGGGCCTGTCTGCATTTCTGCATGCTTTACGACTACACTGggTTGAATTTCAGAACAAGTTTTACGAGGGGTCCGGATACAAGTTCACACCCTTGTCCTTTGAC

Function

symbol description
si:ch73-173p19.2 Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0007035 vacuolar acidification biological_process
GO:0006811 ion transport biological_process
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0051117 ATPase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-282 Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000103971

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046624 True 2346 mRNA 0.47 20 33439243 33461313

Neighbor

gene id symbol gene type direction distance location
XLOC_023585 slc4a2b coding downstream 49050 33301129 ~ 33390193 (-)
XLOC_023584 si:ch1073-406l10.2 coding downstream 147459 33288455 ~ 33291784 (-)
XLOC_023583 zgc:195173 coding downstream 154240 33279654 ~ 33285003 (-)
XLOC_023582 nrbp2b coding downstream 163104 33226331 ~ 33276139 (-)
XLOC_023581 NA coding downstream 218068 32707441 ~ 33221175 (-)
XLOC_023587 NA coding upstream 88549 33549862 ~ 33670492 (-)
XLOC_023588 LO018309.1 coding upstream 90885 33552198 ~ 33578392 (-)
XLOC_023589 si:dkeyp-87a6.2 coding upstream 228997 33690310 ~ 33693070 (-)
XLOC_023590 cavin4b coding upstream 235817 33697130 ~ 33703504 (-)
XLOC_023591 tmeff1b coding upstream 247491 33708804 ~ 33756003 (-)
XLOC_023665 dre-mir-735 misc upstream 4716648 38177961 ~ 38178027 (-)
XLOC_023575 NA non-coding downstream 1030839 32406894 ~ 32408404 (-)
XLOC_023574 NA non-coding downstream 1075881 32362433 ~ 32363362 (-)
XLOC_023567 CT737162.3 non-coding downstream 1652666 31786463 ~ 31786577 (-)
XLOC_023566 NA non-coding downstream 1682892 31755247 ~ 31756351 (-)
XLOC_023594 NA non-coding upstream 373511 33834824 ~ 33839361 (-)
XLOC_023596 NA non-coding upstream 595966 34057279 ~ 34069758 (-)
XLOC_023597 CT583690.1 non-coding upstream 651443 34112756 ~ 34115514 (-)
XLOC_023600 NA non-coding upstream 1401727 34863040 ~ 34863601 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_03855645_03863349 NA coding CI01000082 null 3855433 ~ 3863349 (-)