G446414


Basic Information

Item Value
gene id G446414
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81951441 ~ 82072880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU505140
acactctcacattatggcttcctgaagttacactctctcacattatggcatcccgaagttacactctctcacattatggcttactgaagttacactctcacattatggcttcctgaagttacactctctcacattatggcttcctgaagaagttacactctctcacattatggcttcctgaagttacactctcacattatggcttcctgaagttacactctctaaaattatggcttcctgaagttacactctctcacattatggcttactgaagttacactctctcacattatggcttactgaagttacactctcacattatggcttcctgaagttacactctctcacattattgcttactgaagttacactctctgacattatggcttcctgaagttgcactctctcacattatggcttcctgaagttacactctcacactatggcttcctaaacttacactctctcacattttggcttactgaagttacactctcacattatggcttcctgaagttacactctctcacattatggcttcctgaagttacactctctcacattatggcttcctgaagttacactctctcacgttatggcttcctgaagttacactctctaacattatggcttactgaagttacactttctctcacattatggcttactgaagttacactctcacatcatGGCTTTCTGAAGTatcactctctcacattatggcttcctgaagttacactctctcacattatggcttactgaagttacactctctcacattatggcttcctgaagttacactctctcacattatggcttcctgaagttgcactctctcacattatggcttcctgaagtagcactctctcacattatggcttcctgaagttacactctctcacattatggcttcctgaagttacactctctcacattatggcttactaaagttacactctcacattatggttTCCTGAAgctacactctctcacattatggcttcctgaagttacactctctcacattatggcttcctgaagttacactctcacattatggcttcctgaagttacactctcacattatggcttcctgaagttacactctctcacattatggcttactgaagttacactctcacattatggcttactgaagttacactctctcacattatggcttcctgaagtaaaactctctcacattatggcttcctgaagttacactctctcacattatggcctacagaagaagttacactctcacattatggcttcctgaagttacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccagatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacatttttttcccattcctccttgcaaaacagctcgagctcagtgaggtctgatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccatcccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtggtcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttaatctgaccagagcaccttcttccacatgtttggtatgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataatggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctacctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagggcaggtgcattta

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU505140 True 2583 lncRNA 0.42 4 81951441 82072880

Neighbor

gene id symbol gene type direction distance location
LOC110523016 LOC106560408 coding upstream 30935 81892826 ~ 81920506 (+)
LOC110524668 LOC106560365 coding upstream 125745 81781102 ~ 81825696 (+)
bphl bphl coding upstream 317262 81625006 ~ 81634179 (+)
LOC110524662 exoc2 coding upstream 376046 81417392 ~ 81575395 (+)
gmds gmds coding upstream 720761 80974166 ~ 81230680 (+)
LOC118964728 LOC106560395 coding downstream 66950 82139830 ~ 82141500 (+)
LOC118936420 LOC106560395 coding downstream 68904 82141784 ~ 82149709 (+)
igfbp1a LOC101268901 coding downstream 145592 82218472 ~ 82220496 (+)
LOC110523018 LOC106560398 coding downstream 468657 82541537 ~ 82600595 (+)
c5h8orf82 cssa10h8orf82 coding downstream 533276 82606156 ~ 82629774 (+)
G446413 NA non-coding upstream 3535 81947679 ~ 81947906 (+)
G446411 NA non-coding upstream 6952 81944265 ~ 81944489 (+)
G446406 NA non-coding upstream 11975 81939193 ~ 81939466 (+)
G446405 NA non-coding upstream 15029 81936179 ~ 81936412 (+)
G446385 NA non-coding upstream 42221 81902949 ~ 81909220 (+)
G446468 NA non-coding downstream 4710 82077590 ~ 82078060 (+)
G446469 NA non-coding downstream 7195 82080075 ~ 82080349 (+)
G446470 NA non-coding downstream 10767 82083647 ~ 82083897 (+)
G446471 NA non-coding downstream 11602 82084482 ~ 82085050 (+)
G446473 NA non-coding downstream 14171 82087051 ~ 82087271 (+)
G446381 NA other upstream 53660 81895804 ~ 81897781 (+)
G445211 NA other upstream 1716013 80234880 ~ 80235428 (+)
G445204 NA other upstream 1734351 80216478 ~ 80217090 (+)
LOC110524622 LOC106560333 other upstream 3692985 78245839 ~ 78288092 (+)
G442273 NA other upstream 4368214 77558330 ~ 77583227 (+)
G447001 NA other downstream 351318 82424198 ~ 82442223 (+)
G447020 NA other downstream 379726 82452606 ~ 82458383 (+)
LOC110524684 NA other downstream 1716138 83788574 ~ 83794357 (+)
G448698 NA other downstream 2229220 84302100 ~ 84302473 (+)
LOC118964674 NA other downstream 2315213 84386803 ~ 84389601 (+)

Expression


Co-expression Network