XLOC_023598 (agap3)


Basic Information

Item Value
gene id XLOC_023598
gene name agap3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 34139146 ~ 34335265 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046634
ATGAGCATGTTTGTCTTCCCAGACAACAACAGGAGACAGCAAACCACATCAACCAACCACCAAGACAGTTCTACAAGACCTCACAGTTTTTGCATGTTGGAAGCAACCAACTCTAAACAAGTTATTTTGCCTACCTCTGCTTCCACTAATCATGGTTTTCCAGATGTGGTCCAGCGGTGTAGGACAAGGCGAGCTGAGCTGCGTGCCATCGATGGTTTAAAACCTGACATGCCGCCATCTGCCAGCCTGTTACCTCTTCGTCTAGAAGAACCGCCAATCCGACGGACTTTGAAAAGCAGGAGCAAACCAAGGCCTGTTAGCATGACTGTTCTTGAGCTTTATAAAGAGCGTAGTGGATCTCGGGATGAGCTTGCAAGCCATACTGGCACCGGTAGTTTGCCTCGTCCAGGATTCCGGTGGAAATGGTTTGGTCGACAGGCAACTGGAAAAGAAATGGGGGTGACACAAATTTCAGCAAAGCTGAAGGAATCTAACAAAGAAGAAGCACCCAAAAAAATGTTCGGATCGCTGAGAAGGAGTTTGAGCCTCCGGATGAGACGAAATCGTAATCAACCTGAGCATGAGGACAGAACTGAGCTGAGACGCACTGCAAGTATTGGAGAAAAATCTATGCAAAGCACTCGCCCATTCTCGTACCTTACTGGCAGGACGTTAGCACCAGCATGTGAGCAAGATGAGGACCAAGGGGCCACACAATACATACAGTACCAAACACAGGGCAAAGTAGCAGTCTTGGAGGTTCCTCTTCGACCTGCCAAATTAACCAAGCCCACTAAACAAATGCAGCCAGAGACTAGTTTTTGGCAGCTAATTGCTAGTCGTTTTAAGAGGAAGGAGCCGTTGTCCAGCAACAAATCTGAGCTGAGCACTGGAAGCCAAGCAGTTGGCAGCCATCCCCCTGTGAGAAATAAAAAGCCAGATTCTGTTGCTATAGAGACTCTAGCTGGCATTGGTTTCCGCAAAGGTCAAGATTCCTTCGTCAACAGTCAGGAGTGGACATTGAGTCGATCAGTACCAGAGCTCAAAGTGGGCATCGTGGGAAACCTGTCCAGTGGGAAGTCGGCATTAGTTCACCGGTATCTGACAGGAACATATGTCCAGGAGGAGTCGCCTGAGGgaggGAGGTTTAAAAAGGAGATTGTGGTGGATGGCCAGAGTTATCTACTGCTGATCAGAGATGAAGGAGGTCCACCAGAACTACAGtTTGCGGCCTGGGTGGATGCAGTAGTGTTCGTCTTCAGCCTGGAGGATGAGATCAGCTTCCAGACGGTTTATAACTACTTCCTGCGTCTTTCTAGCTACAGGAACGCAGCGGAGGTTCCCATGGTGCTGGTGGGGACGCAGGATGCCATCAGCGCTGCTAACCCCAGAGTGATAGATGACGCTCGAGCTCGCAAACTGTCCAATGACCTGAAACGCTCCACATATTATGAGACGTGCTCCACCTACGGGCTGAACGTAGAGAGAGTCTTTCAAGACGTTGCCCAGAAGGTGGTGGCGCTGAGGAAAAAACAGCAGCTTTCTATTGGTCCATGTAAATCTCTGCCCAACTCTCCTAGCCACTCGTCTGTCCCAGCTGCATCCATCCCGTCTGTACACATCAACCAGGCTGCTAACGGAGGAGGCGCGTTCAGCGATTACTCCTCCTCGGTTCCCTCCACCCCCAGCATAAGCCAGAGGGAGATGCGCATCGAGACCGTCGCCGCCTCCAACACTCCTACGCCCATCCGCAAGCAGTCCAAGCGACGCTCCAACATCTTCACATCACGGAAAGCCAGTGATCAGACAAAGAGCATTGAGAGTAAAACTGACAGTATAGGCAGTGGAAGGGCCATACCCATCAAGCAGGGGATTTTGTTAAAAAGAAGCGGGAAGTCTCTCAATAAGGAGTGGAAGAAGAAATATGTGACTTTGTGTGACAACGGTCTGCTCACGTACCACCCCAGTTTACACGACTACATGCAGAATGTTCATGGTAAAGAGATCGATCTGCTGCGGACGACGGTGAAGGTGCCAGGGAAGAGACCGCCTAGAGCAGTGGCTACAGTCGCCCCTACAGCCAGTCCAAAAACCAACGGCCTGACCAAAGACCGCAGCACTTTACAACTCGGCATCGGAGCCACAAGCACTCCTCACTCAAACAGCAGCAGTTCCCTTCAGTCCGGGGGTTCGACGGCTGGTGTGGCTTTAGGAACTAATAAGGAAGGAATGCACCAGCGCTCATTCTCCGTGTCCAGTGCTGAACAGTGGAACGAGGCAGTTATCAGCACCACATCAGCCAATGGCGTGTCGGATCCTCTTAGCTCCGCCTCTGGCATGAGCAGCGCCACCAGTCCCAAACTCGAGCCTCCACCATCACCTCACGCCAACCGCAAAAAACACCGGCGGAAAAAGAGCACGGGCATCACCAAACCAGACAGCCTTTCTGCAGGGAGTGAAGagccgGAGGAGTCATTTGAGTTCATCATTGTGTCTCTGACGGGTCAGATGTGGCACTTCGAGGCGTCCACCTTCGAGGAGCGAGAGCTGTGGGTTCAGGCCATCGAGAGCCAGATACTGGCCAGCCTGCAGTCCTGCGAGAGCAGCAAGAACAAGTCTCGATTAGGCAGTCAGAGCGACGCGCTGGCCATTCAATCCATCAGAAACGTCAGAGGAAACAGCTTCTGTGCAGACTGTGATGCTCCCAATCCGGATTGGGCGAGTCTGAATCTGGGTGCTTTGATCTGCATCGAGTGCTCCGGGATGCACAGGAACCTGGGTACTCATCTGTCCCGCGTGCGCTCTCTGGATCTGGACGACTGGCCTGTGGAGCTCAGCATGGTGATGACGGCCATCGGGAACGCAATGGCCAACAGCGTCTGGGAGGCCTGTGTGGATGGATACAACAAACCTGGAGTGGACAGCACCAgGGAGGAGAAGGAGCGCTGGATCCGGGCAAAGTATGAGCAGAAGCTGTTTGTGGTGGCTCTGCCTCAGTCAGACGTGCCGCTGGGACAGCAACTCCTGCGGGCCGTGGTGGAGGACGACCTGCGGCTGGTGGTGCTCCTGCTGGCCCACGGCACCAAAGAAGAGGTCAACGAGACCTACGGGGATGGAGACGGACGCACAGCCCTGCACCTGTCCTGCGCCATGGCTAATGTGGTTATCACACAGCTGCTTATCTGGTACGGTGTGGACGTGAAGAGTCGTGACGCACGCGGTCAGACACCTCTGTCTTACGCCCAGCGAGCAGGCAGTCAGGAGTGCGCCGACATCCTGATCCAACACGGCTGTCCTGCTGAAGGTGGCGCTTTATCCACACCCACAGCCACACGACACAATcccaacatcaacaacaacaacggcCAGTGTGCAGAGCTCAATCGCAGCCTCAGCATCATGTAA

Function

symbol description
agap3 Predicted to enable several functions, including GTP binding activity; GTPase activator activity; and GTPase activity. Predicted to be active in nucleus. Orthologous to human AGAP3 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 3).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110927-1 Predicted to enable several functions, including GTP binding activity; GTPase activator activity; and GTPase activity. Predicted to be active in nucleus. Orthologous to human AGAP3 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 3).

Ensembl:

ensembl_id ENSDARG00000087822

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046634 True 3405 mRNA 0.53 18 34139146 34335265

Neighbor

gene id symbol gene type direction distance location
XLOC_023597 CT583690.1 coding downstream 23632 34112756 ~ 34115514 (-)
XLOC_023596 NA coding downstream 69388 34057279 ~ 34069758 (-)
XLOC_023595 asic1c coding downstream 104215 33868109 ~ 34034931 (-)
XLOC_023594 NA coding downstream 299785 33834824 ~ 33839361 (-)
XLOC_023593 abcb8 coding downstream 337478 33781485 ~ 33801668 (-)
XLOC_023599 ctnna1 coding upstream 153051 34488316 ~ 34680956 (-)
XLOC_023600 NA coding upstream 527775 34863040 ~ 34863601 (-)
XLOC_023601 NA coding upstream 548636 34883901 ~ 34949036 (-)
XLOC_023602 NA coding upstream 890219 35225484 ~ 35227688 (-)
XLOC_023603 sntg1 coding upstream 897451 35232716 ~ 35282568 (-)
XLOC_023665 dre-mir-735 misc upstream 3842696 38177961 ~ 38178027 (-)
XLOC_023587 NA non-coding downstream 468654 33549862 ~ 33670492 (-)
XLOC_023581 NA non-coding downstream 917971 32707441 ~ 33221175 (-)
XLOC_023604 NA non-coding upstream 1098551 35433816 ~ 35445157 (-)
XLOC_023608 NA non-coding upstream 1374302 35709567 ~ 35724376 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019183 agap3,LOC107690985,LOC107555304,LOC101174700 coding CM030124.1 CM030124.1 7420743 ~ 7422322 (-)