XLOC_023599 (ctnna1)


Basic Information

Item Value
gene id XLOC_023599
gene name ctnna1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 34488316 ~ 34680956 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046635
CTGAGAGTCAGTGCTGGGAATCCGCCATCATTCTCCGCCTTCAACAAACGGGGAAAACCGAAACTCCGCCGAAACACTGCTCCAACTTAACCAGTTTTCGCTCAAACGGGCGCTTTTAGTCAAGTTTTAGTGGATTGTATGGTTTGGCTTTTGTTTTGCGGCTGGGAGAGATTATAACACGCGGAAAGTAAACTTTACCACAGTATTTGTAAAAGTCTCATCCCTCCATTTTGAATCCGACAGGAATTTCAGCAATTTGGAACATGACGAGCATTAACACTGCTAACATCAACTTCAAATGGGATCCCAAGAGTTTGGAGATCCGTACGCTTGCTGTGGAAAGACTGCTGGAGCCATTGGTAACCCAGGTCACCACACTTGTAAACTCCAGCAACAAAGGTCCATCTAACAAGAAGAAGGGGCGGTCTAAGAAGGCTCACGTATTGGCAGCCTCAGTGGATGAAGCCACCCAGAACTTCTTGGAGAAAGGCGAGAAGATTGCTAAAGAGAGCCAGTTCTTGAAGGAAGAGCTGACCGCAGCGGTGGAGGATGTTCGCAAGCAAGGAGAATCCATGAAGATGGCCTCGGGAGAGTTTGCAGAGGATCCTTGTTCTTCAGTGAAAAGAGGCAACATGGTCCGTGCTGCACGTGCCCTTCTTTCTGCAGTCACTCATCTGCTTGTTCTGGCTGACATGGCTGATGTTTACCAACTTCTTCTTCAACTCAAACTGGTGGAGGAGAACCTGATGAAGGTGCGTAATGCTGGCACTGAGCAAGACCTGGGCATCCAATACAAAGCTCTGAAGCCAGAGGTTGACAAACTGAACATGATGGCGGCCAAGAGGCAGCAGGAACTCAAGGACGTCCATCACAAAGACCAAATGGCAGCAGCTCGCGGCGTCCTTCAGAGGAACGTTCCCATGCTGTACACGGCTTCGCGTGCCTGCCTACAGCACCCAGACGTGGCCGCGTACAAGGCCAACCGGGATCTGATCTACAAGCAGCTGCAGCACGCCGTCTCTGGCATATCTAATGCCGCTCAGGCTACCAGCAGCGAGGATTCCAGCTTCTCCCAGACTGCAGGTGGAGGAGAGCTAGCCTACGCCCTCAACAACTTTGATAAGCAGATCATCGTGGACCCACTGAGTTTCAGCGAGGAGAGATTTCGGCCCTCTCTTGAGGAACGTCTGGAAAGCATCATTAGTGGCGCCGCCCTCATGGCCGATTCCTCATGCACACGCGACGACCGGCGCGAACGCATCGTGGCTGAATGCAACTCTGTGCGCCAGGCGCTGCAGGATCTGCTCTCTGAGTACATGGGCAATGCTGGACGTAAGGAGAAGAGCGATGCCCTCAACACGGCTATTGACAGAATGACTAAGAAGACCCGTGACCTCCGCAGACAGCTGCGGAAGGCTGTGATGGACCACGTGTCGGACTCTTTTCTGGAGACCAATGTTCCTCTGCTGGTATTGATCGAAGCTGCCAAGAATGGTAATGAAAAGGAGGTGAAGGAATATGCCCAAGTTTTCCGTGAGCACGCCAACAAACTGATTGAGGTTGCCAACCTCGCCTGCTCCATCTCCAACAACGAAGAGGGAGTAAAGTTAGTGCGAATGGCCGCTTCCCAGCTGGAAACACTGTGCCCTCAGGTGATTAATGCAGCTTTGGCCCTGGCTGCCAAACCTAACAGCAAGGTGGCTCAGGATAACATGGATTTGTTTAAAGACCAGTGGGAAAAACAGGTGCGAGTGCTCACTGACGCTGTGGATGACATCACTTCCATTGACGACTTCCTCTGCGTGTCTGAAAATCACATTCTGGAGGATGTGAACAAGTGTGTCATCGCTCTGCAAGAAAAGGATGTGGATGGGCTCGATCGCACTGCTGGAGCCATTCGGGGCAGAGCTGCTCGTGTGGTCCATGTGGTCACATCTGAGATGGACAACTATATGCCTGGCGTATACACGGAGAAGGTTCTGGAAGCTACCAAACTTCTTACTGAAACagtgatGCCACGTTTCACCGAGCAAGTAGAGGCAGCAGTGGAGGCTCTCAGTGCCAACAACGGGCAGCCAGTGGACGAGAACGAGTTCATTGATGCCTCGCGTCTGGTGTATGATGGTGTGAGAGACATCAGGAAGGCGGTGCTGATGATCAGGACCCCAGAGGAACTGGATGACTCGGACTTTGAGACTGAAGACTTTGATTCTCGCAGCAGGACCAGCGTTCAGACAGAAGATGATCAGCTCATTGCTGGACAGAGCGCTCGGGCCATCATGGCTCAGCTACCCCAGGAGCAGAAGGCGAAGATTGCGGAGCAGGTGGCCAGTTTCCAGGAGGAGAAGAGCAAGCTGGATGCAGAGGTGTCCAAGTGGGATGACAGTGGAAATGACATCATCGTCTTGGCCAAGCAGATGTGCATGATCATGATGGAGATGACAGACTTCACCAGGGGGAAAGGACCACTCAAAAACACCTCAGATGTGATTAGTGCTGCCAAGAAGATTGCTGAAGCCGGATCAAGAATGGACAAGCTGGGCCGCGCCATTGCAGATCAATGTCCAGATTCAGCGTGCAAGCAGGATCTGTTGGCGTATCTGCAGCGCATCGCCCTGTTCTGTCACCAGCTCAACATCTGCAGTAAAGTCAAAGCGGAGGTGCAGAATCTGGGTGGAGAGCTCGTGGTGTCTGGGCTGGACAGTGCCATGTCTCTGATCCAGGCGGCCAAGAATCTGATGAATTCTGTGGTGTCCACAGTAAAGGCCTCCTACGTGGCCTCCACCAAATACCAGAAATCTCAAGATATGCAAAGCCTCAACATGCCCGCCATCTCCTGGAAGATGAAAGCTCCCGAGAAGAAGCCGCTGGTCAAACGCGAGAAGCTGGACGACGGTCAGACCAATAAAGTCAAGCGGTCCTCTCAAAAGAAGCACATCAACCCTGTGCAGGCCCTGAGCGAGTTCAAAGCTATGGATAGTATTTAAGCAGCATTTCAGTAGATTGAGAGTTCGAGAATACACATTTAAACGCATTCCTGTTCCTTAGTCACCAATCTGCCTTTCTTTCCATGACTAAACTCTTAGGTCTaggggtaacactttaaaatagtgGTGCATTGGTTAATGtgtttactagcatgaacaaactattaggaatacatttattatggtgTTTATTagtctttgttaacattagttaggTAGTTGTTAAATCACTGTtcataaactaatgttaacaagtcaggttttaataatgcataatgTTGAagcatgattaataaatgatttgcaAGATCAGGCATGcgtaatgttagtaaatacattaagtaatgttccattattttaaagtgttaccaataaatgttatatttttacacaaataaaatgattaatccACTCAATCTTTACTCGAGGACAGGTATATGGGGCGCACATAAGAATTTCGGGCATTCCCTCAGTTTATATGTACGTTTCCCTCTTTTCTAGATgacatgtgtatttttttaagtgtattttacgAGAAGACTTTTATATATTTCACACTAAGGGCTTTGATATTGCCCCATTGCTGTTTTCATCTCTCCGCTCTTCATGCCTATGCAAACTCACGCTGCAACAATTCCTGTGTTTTTGGGATGAAACTACAAAAGAGGAAAAGGCTTTGATGGTCTCAAAACCAAAgtccttgtatttttttttgttgctgtgcCTAATAAACTTTTGATAACTTTA

Function

symbol description
ctnna1 Enables actin filament binding activity and cadherin binding activity. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).

GO:

id name namespace
GO:0001894 tissue homeostasis biological_process
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0005912 adherens junction cellular_component
GO:0005938 cell cortex cellular_component
GO:0016342 catenin complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991207-24 Enables actin filament binding activity and cadherin binding activity. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).

Ensembl:

ensembl_id ENSDARG00000102441

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046635 True 3734 mRNA 0.48 18 34488316 34680956

Neighbor

gene id symbol gene type direction distance location
XLOC_023598 agap3 coding downstream 153051 34139146 ~ 34335265 (-)
XLOC_023597 CT583690.1 coding downstream 372802 34112756 ~ 34115514 (-)
XLOC_023596 NA coding downstream 418558 34057279 ~ 34069758 (-)
XLOC_023595 asic1c coding downstream 453385 33868109 ~ 34034931 (-)
XLOC_023594 NA coding downstream 648955 33834824 ~ 33839361 (-)
XLOC_023600 NA coding upstream 182084 34863040 ~ 34863601 (-)
XLOC_023601 NA coding upstream 202945 34883901 ~ 34949036 (-)
XLOC_023602 NA coding upstream 544528 35225484 ~ 35227688 (-)
XLOC_023603 sntg1 coding upstream 551760 35232716 ~ 35282568 (-)
XLOC_023604 NA coding upstream 752860 35433816 ~ 35445157 (-)
XLOC_023665 dre-mir-735 misc upstream 3497005 38177961 ~ 38178027 (-)
XLOC_023587 NA non-coding downstream 817824 33549862 ~ 33670492 (-)
XLOC_023581 NA non-coding downstream 1267141 32707441 ~ 33221175 (-)
XLOC_023608 NA non-coding upstream 1028611 35709567 ~ 35724376 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_03584834_03629968 CTNNA1 coding CI01000000 null 3584264 ~ 3630022 (-)
bowfin (Amia calva) AMCG00011434 ctnna1 coding CM030133.1 CM030133.1 24148957 ~ 24174504 (+)