XLOC_023607 (mapre2)


Basic Information

Item Value
gene id XLOC_023607
gene name mapre2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 35679797 ~ 35707552 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046641
ATGCCCGGTCCGACCCAAGCTCTGTCCCCCAATGGAGAGAACAACAACGACATCATTCCGGACAACAACGGCACCAACATCATTCCCTACAGAAAGAACACAGTGCGGGGAGAGCGCGCCTACAGCTGGGGGATGGCGGTCAACGTTTACTCTACCTCAATCACCCAGGAGACGATGAGCAGGCATGACATCACAGCCTGGGTCAACGATCTGCTCTGTCTAAACTACACTAAAGTGGAGCAGCTGTCGTCAGGAGCGGCGTACTGTCAGTTCATGGACATGCTGTTTCCCGGCTGTATCAGTCTTAAGAAGGTGAAATTCCAGGCCAAGCTGGAGCATGAATACATCCACAACTTCAAGCTCCTGCAGGCCTCCTTCAAGAGGATGAATGTTGATAAGATTATCCCCGTAGAGAAGCTCGTCAAGGGGCGATTTCAAGACAACCTTGACTTCATTCAGTGGTTCAAGAAGTTCTTTGATGCAAATTATGATGGTAAAGAGTACGACCCGGTGGAGGCCAGACAGGGACAGGACGCCATTCCCCCTCCAGACCCTGGCGAGCAGATCTTCAACCTGCCAAAGAAATCCCACCACGCCGCCAGCTCTCCCACCGCAGGAGCTACTCGATCAACCAGTTCCACCCCTAAATCCTCCACTTCCACCTCCACCTCCACCTCTCGGCCCTCCTCTGCCAAAAAGCTCCCGGTGATGTCGGCGACACCCGCGAAGGGCGAGAAAGAGCTGGAAGCCCAAGTAACACAACTAAACGAACAGATGAACACGTTAAAACTGGCACTTGAAGGAGTGGAGAAGGAGAGGGATTTCTACTTCGGGAAGCTGCGGGAAGTGGAGCTGTTGTGTCAGGAGCAGGGCCAAGACAACGGACCCTTCGTCGAGAGACTCATGGAGGTGCTGTACTCCGCAGACGACCAGGAGGCGGGCGGAGAGGAGCACGAGGCTCCGGCTCAGGAGGAGGACGTTCCAGACGACACAcctgctttaAGTAGAATTGACTTTCTTCCTATTGCTTAA
>TCONS_00046642
GAGATCGCTGTCGAGTGGAagacacattcatacacacacaaacacacacacatacatttactcGGGATTTACACTGAGAACAAGCAGGCAGACGGCAGGGAACAGCCCCGACGTCCCTTTCCTCGTCCTTTCGAGTATTTCACAGAGCCAAATGCCCGGTCCGACCCAAGCTCTGTCCCCCAATGGAGAGAACAACAACGACATCATTCCGGACAACAACGGCACCAACATCATTCCCTACAGAAAGAACACAGTGCGGGGAGAGCGCGCCTACAGCTGGGGGATGGCGGTCAACGTTTACTCTACCTCAATCACCCAGGAGACGATGAGCAGGCATGACATCACAGCCTGGGTCAACGATCTGCTCTGTCTAAACTACACTAAAGTGGAGCAGCTGTCGTCAGGAGCGGCGTACTGTCAGTTCATGGACATGCTGTTTCCCGGCTGTATCAGTCTTAAGAAGGTGAAATTCCAGGCCAAGCTGGAGCATGAATACATCCACAACTTCAAGCTCCTGCAGGCCTCCTTCAAGAGGATGAATGTTGATAAGATTATCCCCGTAGAGAAGCTCGTCAAGGGGCGATTTCAAGACAACCTTGACTTCATTCAGTGGTTCAAGAAGTTCTTTGATGCAAATTATGATGGTAAAGAGTACGACCCGGTGGAGGCCAGACAGGGACAGGACGCCATTCCCCCTCCAGACCCTGGCGAGCAGATCTTCAACCTGCCAAAGAAATCCCACCACGCCGCCAGCTCTCCCACCGCAGGAGCTACTCGATCAACCAGTTCCACCCCTAAATCCTCCACTTCCACCTCCACCTCCACCTCTCGGCCCTCCTCTGCCAAAAAGCTCCCGGTGATGTCGGCGACACCCGCGAAGGGCGAGAAAGAGCTGGAAGCCCAAGTAACACAACTAAACGAACAGATGAACACGTTAAAACTGGCACTTGAAGGAGTGGAGAAGGAGAGGGATTTCTACTTCGGGAAGCTGCGGGAAGTGGAGCTGTTGTGTCAGGAGCAGGGCCAAGACAACGGACCCTTCGTCGAGAGACTCATGGAGGTGCTGTACTCCGCAGACGACCAGGAGGCGGGCGGAGAGGAGCACGAGGCTCCGGCTCAGGAGGAGGACGTTCCAGACGACACACAGGACGAATactgaacacacatacacacacacaaacacactgcttcAGCTTCATTCTCTCAGACTCACAACGGTTCAATTCTCAGTTGCTCTCATCATGAAGGAGTGAGAGATCAGTCGGCCGAACTCTCAAACCCGTCTTTTGTGTTGGTCGGTTCATTTTGCAGCCCTGTTCGATCGCATCATGACTATTCTCAACATCAGCTTAAATGGTGAATGTTG
>TCONS_00046643
ACCACTGGACAGGCTGCAAGAGAGCTGGTTCTCCAGGGCGCTGGAGGGTGGGGTGCGAACGGAGACGCGCAGCTGGTTTGGTCGGATTTGCAGTTGAGTTCACGGCTGGGGGATGGCGGTCAACGTTTACTCTACCTCAATCACCCAGGAGACGATGAGCAGGCATGACATCACAGCCTGGGTCAACGATCTGCTCTGTCTAAACTACACTAAAGTGGAGCAGCTGTCGTCAGGAGCGGCGTACTGTCAGTTCATGGACATGCTGTTTCCCGGCTGTATCAGTCTTAAGAAGGTGAAATTCCAGGCCAAGCTGGAGCATGAATACATCCACAACTTCAAGCTCCTGCAGGCCTCCTTCAAGAGGATGAATGTTGATAAGATTATCCCCGTAGAGAAGCTCGTCAAGGGGCGATTTCAAGACAACCTTGACTTCATTCAGTGGTTCAAGAAGTTCTTTGATGCAAATTATGATGGTAAAGAGTACGACCCGGTGGAGGCCAGACAGGGACAGGACGCCATTCCCCCTCCAGACCCTGGCGAGCAGATCTTCAACCTGCCAAAGAAATCCCACCACGCCGCCAGCTCTCCCACCGCAGGAGCTACTCGATCAACCAGTTCCACCCCTAAATCCTCCACTTC

Function

symbol description
mapre2 Predicted to enable microtubule plus-end binding activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Human ortholog(s) of this gene implicated in congenital symmetric circumferential skin creases 2. Orthologous to human MAPRE2 (microtubule associated protein RP/EB family member 2).

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:1904825 protein localization to microtubule plus-end biological_process
GO:0035372 protein localization to microtubule biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0051233 spindle midzone cellular_component
GO:0005874 microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0035371 microtubule plus-end cellular_component
GO:0051010 microtubule plus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-41 Predicted to enable microtubule plus-end binding activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Human ortholog(s) of this gene implicated in congenital symmetric circumferential skin creases 2. Orthologous to human MAPRE2 (microtubule associated protein RP/EB family member 2).

Ensembl:

ensembl_id ENSDARG00000099943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046641 False 1032 mRNA 0.54 8 35679797 35699444
TCONS_00046642 False 1366 mRNA 0.53 7 35681480 35699595
TCONS_00046643 True 639 mRNA 0.54 5 35683914 35707552

Neighbor

gene id symbol gene type direction distance location
XLOC_023606 mcm4 coding downstream 118125 35536664 ~ 35561672 (-)
XLOC_023605 ube2v2 coding downstream 145524 35522301 ~ 35534273 (-)
XLOC_023604 NA coding downstream 234640 35433816 ~ 35445157 (-)
XLOC_023603 sntg1 coding downstream 397229 35232716 ~ 35282568 (-)
XLOC_023602 NA coding downstream 452109 35225484 ~ 35227688 (-)
XLOC_023608 NA coding upstream 2015 35709567 ~ 35724376 (-)
XLOC_023609 dtna coding upstream 6107 35713659 ~ 35767501 (-)
XLOC_023610 NA coding upstream 171209 35878761 ~ 35922389 (-)
XLOC_023611 NA coding upstream 267267 35974819 ~ 35996250 (-)
XLOC_023612 NA coding upstream 290887 35998439 ~ 36014730 (-)
XLOC_023665 dre-mir-735 misc upstream 2470409 38177961 ~ 38178027 (-)
XLOC_023601 NA non-coding downstream 730761 34883901 ~ 34949036 (-)
XLOC_023600 NA non-coding downstream 816196 34863040 ~ 34863601 (-)
XLOC_023597 CT583690.1 non-coding downstream 1564283 34112756 ~ 34115514 (-)
XLOC_023613 NA non-coding upstream 339147 36046699 ~ 36047192 (-)

Expression


Co-expression Network