XLOC_023610


Basic Information

Item Value
gene id XLOC_023610
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 35878761 ~ 35922389 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047236
TTATGTGTCTCCTGCATGCGTTCGTGAGCACGTCAAATCCAACAGTCGCTGCGGGCTGGAACAAACTAGCTGGGTTGTTGAGAAAGCATATAGCCTCGAAACTGCCCGCTATCTGTTATCCggccacgcacacacacacacacgcgcgggcgcgcgcacacacacacccccttACAAGACATAAATGCATGCACACATTCCCCCTGATATGCGATACAAAAGCAATTAGTTTGTCTCCCGCAACATCAGCAGCATCACCACCATAGATGTGCGGTTGCGCATCGCGTTGATCGGCAACAACACAATGCGATCGCTCCGTCCAACAACACGCGCGGTGTTTATCACGCAATCCGAGGCAGAACAGCAGAAGAAACGGCAACTTTTCAGCCCGAGGCACGTTTACGCACAGTGCGCACCCGTGCCCATTACTAGCAGTAGGTATCCAAAAACTTACCTGACTTAAAGAAAAGTAAAGCCGCGGCTCCCTCAGTGCACTTTCTTTGTTCAGTCCTGTTGGAAAAGTCTATGATCGATGGATCAGAATCCCAATCATCGATCCCCGCTCATTCAAGCTCATTGATCATTTATGTTTCCTCTGAATTAACAAGAAGaagaagtgtgtgtgagtgtgagaggaGCTGTGTGCTTTCTgcaagagaagaagaagaagaagaagaagaaatataCGTGTGACAAATTATGCTACCAAGAAACAACACATCATTATCCTTGGGCCTGGGGCTCAGTGAGTCGTAACGAGAGTAATAGGAAATCCACGGTCGGGGAGAGAAACGGACGCGCATGGCCGGTGGAGAGAGACCGCGCAGGGGTATGGATGCTGGAGAGACTCGCAAAATTATGGCTCAAGGCTATTGTAAAAACTGTCGAGCGTAAATGACTGCGATTTCAAACATCTATGGAAAAAGAGGAGAGGAGAAAAGGCGAGTctttcctctctttctctctgcgtTATGGAGAGAACCGTCAAGTTTTAGTGCGCATTGCTAATTAGTCAATTTCTCTGTTCCTTCACAGCCCGACGCCTCTGCTGCTGAGCTGAAACTGCTAATTTCTGGGACCAGCCTTTTTTTTGGGCTCTGAACGGGGGATGGATGAATGGCTTGTCTCGCACAAATGACAAAAAGCCCCCCTCTGCCTTAATCTCCATCGCCAAAATAACCCcatctttttttctccttttgcTTAGTCCTTCAAAAGAACGAACAAGCCACTTTGGGCAAACTTGTCTGGTGGTCTTGAGTGGGCTTCATGGATTTGGCATCAAATGCAAATCAGTTTGTAAATAGACGACCATGCATGTTGCTGAATTATTTGATATAATTTTGCAATGCAATTAGTTTTTTCCCCCTTTAGTTCTCCAAATGTATTAAtctcctttttaaataaaactatttcacacatactgtatatttatttgacATGTCTCGTTTTTCTGTATGCATTGCTTAGAGGCAGTCAGTCACTAAAAAGAATCAGACTTCACATTCACAAGAAACTTCTGGACAAAGCAAACTGTGTGGCCATTCTAGAGTACGTTAAAATAGATCTCTTTTCAGTATAACATTACTCACCggaatactgtttttatttttaaattaaataatatttgtcatACTGAAACAGTCAGAATAAGCAGGCATCAGGTAACTAAATCTCCATATTATAACAAAATAGTTGCTTGACATGCAAGACAGATTTATAAGGCTACATAGCCATCTGGAAAACGGCATCGAGCTTACAAAGCCATTAAAAGAAAAGGTTTGAGACAAAGCATATGGATCAAGTGAAGGATTAAACTTTTtcgtttctgtttttgttttctaataGCACTTCCTGTTCTCCTAATGAAAGTTTTACTGCTGGTGCATTACTTAAATTTTCTCAGTCATTCCCTGATAGTTCTTCTTGCATTTAAGGGTGGAGAAAATCTGCAGatgaaatgaaatataataataataataataaaatatatatttgtagttgaagtcagaattattagccccctgtttattttccccccaatttttgtttaatatagagatttgttcaatacatttctaaacataataattttaataactcatctctaataactgatttattttatctttgtcatgatgacagtaaataatatttgactagatatttttaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattagattcactaggcaggttaggttaattaggcaagttattgtataacgatggtttgttctgtataggTAATCGaacaaatttagcttaaaggggctaataattttcaccttaaaatggcgtttaaaaattaaaactgctttaattatagctgaaataaaactaataagactttctccagaagacaaaatattatcagacatactgtgaaaatttccttgctctgttaaacatcctttgggaaatatttaaaaaagaaaaataaattcaaagggggactaataattaggcaacttattgtataacgatggtttgttctgtagactattgaaaaaaaaaaaacaataattttgaccttaaatggtttttaaaaaaattaataactgcttttattctagccgaaaaaaaacaaatatattatctccagaagaaaaaatattatcaggcatactgtgaaaatttccttgctctgttaaacataatttgggaaatatttaaaaaagaagaataaattaaaagggggtttaataattctgacttcaactgtatataaaataattaacaatgcAGCACAATGGCAAACATGCACCACAAATAAAAGATAGATTGCTAacagtcagatttttttttgtattttgcatgcttttatttctttttgcaaGTTGCAACAATATTGCatgtattttattagtattattcacCACCATATACAGACCTAAGCACTATGCCGACTGTTTTTAGTCTCTGTTCACTAATAAAGTGAGATCTGAAGATGTT
>TCONS_00046647
GACAAATCCAATCCAGCCCGCGCTGAAACAACAACAGCCCGACGCCTCTGCTGCTGAGCTGAAACTGCTAATTTCTGGGACCAGCCTTTTTTTTGGGCTCTGAACGGGGGATGGATGAATGGCTTGTCTCGCACAAATGACAAAAAGCCCCCCTCTGCCTTAATCTCCATCGCCAAAATAACCCcatctttttttctccttttgcTTAGTCCTTCAAAAGAACGAACAAGCCACTTTGGGCAAACTTGTCTGGTGGTCTTGAGTGGGCTTCATGGATTTGGCATCAAATGCAAATCAGTTTGTAAATAGACGACCATGCATGTTGCTGAATTATTTGATATAATTTTGCAATGCAATTAGTTTTTTCCCCCTTTAGTTCTCCAAATGTATTAAtctcctttttaaataaaactatttcacacatactgtatatttatttgacATGTCTCGTTTTTCTGTATGCATTGCTTAGAGGCAGTCAGTCACTAAAAAGAATCAGACTTCACATTCACAAGAAACTTCTGGACAAAGCAAACTGTGTGGCCATTCTAGAGTACGTTAAAATAGATCTCTTTTCAGTATAACATTACTCACCggaatactgtttttatttttaaattaaataatatttgtcatACTGAAACAGTCAGAATAAGCAGGCATCAGGTAACTAAATCTCCATATTATAACAAAATAGTTGCTTGACATGCAAGACAGATTTATAAGGCTACATAGCCATCTGGAAAACGGCATCGAGCTTACAAAGCCATTAAAAGAAAAGGTTTGAGACAAAGCATATGGATCAAGTGAAGGATTAAACTTTTtcgtttctgtttttgttttctaataGCACTTCCTGTTCTCCTAATGAAAGTTTTACTGCTGGTGCATTACTTAAATTTTCTCAGTCATTCCCTGATAGTTCTTCTTGCATTTAAGGGTGGAGAAAATCTGCAGatgaaatgaaatataataataataataataaaatatatatttgtagttgaagtcagaattattagccccctgtttattttccccccaatttttgtttaatatagagatttgttcaatacatttctaaacataataattttaataactcatctctaataactgatttattttatctttgtcatgatgacagtaaataatatttgactagatatttttaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattagattcactaggcaggttaggttaattaggcaagttattgtataacgatggtttgttctgtataggTAATCGaacaaatttagcttaaaggggctaataattttcaccttaaaatggcgtttaaaaattaaaactgctttaattatagctgaaataaaactaataagactttctccagaagacaaaatattatcagacatactgtgaaaatttccttgctctgttaaacatcctttgggaaatatttaaaaaagaaaaataaattcaaagggggactaataattaggcaacttattgtataacgatggtttgttctgtagactattgaaaaaaaaaaaacaataattttgaccttaaatggtttttaaaaaaattaataactgcttttattctagccgaaaaaaaacaaatatattatctccagaagaaaaaatattatcaggcatactgtgaaaatttccttgctctgttaaacataatttgggaaatatttaaaaaagaagaataaattaaaagggggtttaataattctgacttcaactgtatataaaataattaacaatgcAGCACAATGGCAAACATGCACCACAAATAAAAGATAGATTGCTAacagtcagatttttttttgtattttgcatgcttttatttctttttgcaaGTTGCAACAATATTGCatgtattttattagtattattcacCACCATATACAGACCTAAGCACTATGCCGACTGTTTTTAGTCTCTGTTCACTAATAAAGTGAGATCTGAAGATGTT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0072359 circulatory system development biological_process
GO:0003015 heart process biological_process
GO:0060047 heart contraction biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047236 False 2998 lncRNA 0.37 1 35878761 35881758
TCONS_00046647 True 2000 lncRNA 0.32 2 35878761 35922389

Neighbor

gene id symbol gene type direction distance location
XLOC_023609 dtna coding downstream 111260 35713659 ~ 35767501 (-)
XLOC_023608 NA coding downstream 154385 35709567 ~ 35724376 (-)
XLOC_023607 mapre2 coding downstream 171209 35679797 ~ 35707552 (-)
XLOC_023606 mcm4 coding downstream 317089 35536664 ~ 35561672 (-)
XLOC_023605 ube2v2 coding downstream 344488 35522301 ~ 35534273 (-)
XLOC_023611 NA coding upstream 52430 35974819 ~ 35996250 (-)
XLOC_023612 NA coding upstream 76050 35998439 ~ 36014730 (-)
XLOC_023613 NA coding upstream 124310 36046699 ~ 36047192 (-)
XLOC_023614 CABZ01075509.1 coding upstream 168405 36090794 ~ 36095526 (-)
XLOC_023615 tmem14cb coding upstream 206827 36129216 ~ 36136401 (-)
XLOC_023665 dre-mir-735 misc upstream 2255572 38177961 ~ 38178027 (-)
XLOC_023604 NA non-coding downstream 433604 35433816 ~ 35445157 (-)
XLOC_023602 NA non-coding downstream 651073 35225484 ~ 35227688 (-)
XLOC_023601 NA non-coding downstream 929725 34883901 ~ 34949036 (-)
XLOC_023600 NA non-coding downstream 1015160 34863040 ~ 34863601 (-)
XLOC_023621 NA non-coding upstream 353186 36275575 ~ 36427781 (-)
XLOC_023624 NA non-coding upstream 442047 36364436 ~ 36366766 (-)

Expression


Co-expression Network