XLOC_023645 (cluap1)


Basic Information

Item Value
gene id XLOC_023645
gene name cluap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37466770 ~ 37484123 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046679
TGCATGGGTGCCATAGTGACGAACACAGCAACAGACGCCTTTTCGAGGCAAAAACATCCGCTTTATATGCTAATCATTACTGTTATTTTTACATGATTTACAACTAAAACGGTGACAGTTGTGTGTTTACTGGATTAAAGGACAGCAATCATGTCTTTTAGAGATCTGAGAAATTTTACAGAGATGATGCGAGCGCTTGGCTACCCTCGACTCATTTCCATGGAAAACTTCAGATCTCCAAACTTCCCTTTAGTAGCTGAGATTCTCATCTGGCTTGTCAAGAGATATGAGCCTCAGATGGAAATTCCCAGTGATGTTGATACGGAGTCAGACAGAGTGTTTTTCATCAAAGCTGTGGCTCAATTCATGGCCACTAAAGCTCACGTAAAGCTGAATCTGAAGCGTCTCTATCAGGCGGATGGCTACGCTGTGAAAGAGATGCTAAAAATCACCAGCATCCTCTATAATGCTATGAAAACCAAGGAGAACGCAGGAGGAGATCAGAACAATGATGAAAACAGCAAGTTCAAGTTTGATCTGGGCTCAAAGATTGCTGATTTAAAGCTGGCTCGTCAGCTAGGCTCGGAGATAACAGCAAAGGGTGCAGCTCTGTTTGACCTGCTAGGGCAAGAAGAGGACCTGAGAGAGAGCAGGACAGCTGCAATTGCGCGACCACTAGAGATCACAGAAACAGAGAGAGCCATTAGAGCGGCGGTCAAAGATGTTACGGAGAGCATACAAATGACAAAAGATCTGCTCAACAACGTGTCATCAGATGAGGCCAGTCTGGAGGCTAAAATCGAGAAGAAGAAACAAGACCTGGAGAGAAACCAGAAACGTTTGCAAACCTTACAGAGCGTGCGTCCAGCGTTTATGGATGAATATGAGAAGATCGAGGAGGACTTGGAGAAACAGTACCAGACGTATGTGGAGAAATATCGTAACCTGAGCTTCCTGGAGCAGCAGCTGGATGACTATCACAGAGTAGAGCAGGAGCGATTCGAGGAAGCAGAAATGGCAATGAAAATGAGACAGAACAAAttaaaagaggaggagaagaggCTTATGAGGAGCGGAGTAGCCAGAGATGAAGATTCGGACGTGGACATACCAGAGGATGAAGGCTCTGACAGTGACATAGATGACGGACAGCAGGCCAGACCGCACCACCCTCGACACACACAAATATCAGGTCGAGGTGGCGCTCGATTCATCGGCAGTATGAGAGGAGGAGACAGCGAAGAGACAGAGGACAGTGAGATTGACGTAGATGACGACGAcgaggatgatgatgaagacgGTGAGGAAGATGAAGAGGAAAATGAAGATCTGGATGAAGATAATGACAGTCTGGAGGGATCATCTGGCAAACCCGGACGCACAAACCAATCCCTGCACCCACAAATCCTTGAGGAGAGCGATAACGATTTTTAACATCGTCAAAAACTCAATACATAATGACTTAAAATATGCTGTATTGATTTAAATATTCATGATTCTTATGTAAATTGCTGCATTGAagttaaatgtatgtaaatacacATCTACATCTCATTTGTATTCCTGTTAAATCTTAAATCTCGTTAATTTGTGAGTTTGAGAGGGTTTTTGTTTGActaaaaatgctttattaaggCTGTCAgtaatgttatataaaatatattacattttattttaatacataaacGTAATGATATGTCACAAATATATACACCAATAAGGCTGTGAATAAACATGTTTCCTAATGTGTGCTGTGGAAA
>TCONS_00046680
TAACCTGAGCTTCCTGGAGCAGCAGCTGGATGACTATCACAGAGTAGAGCAGGAGCGATTCGAGGAAGCAGAAATGGCAATGAAAATGAGACAGAACAAAttaaaagaggaggagaagaggCTTATGAGGAGCGGAGTAGCCAGAGATGAAGATTCGGACGTGGACATACCAGAGGATGAAGGCTCTGACAGTGACATAGATGACGGACAGCAGGCCAGACCGCACCACCCTCGACACACACAAATATCAGGTCGAGGTGGCGCTCGATTCATCGGCAGTATGAGAGGAGGAGACAGCGAAGAGCCCAAAGTAAAGGAAAGAGCTGGCCTATCCGGCAGTGGCcggaaacaaaagaaaaaaaagACAGAGGACAGTGAGATTGACGTAGATGACGACGAcgaggatgatgatgaagacgGTGAGGAAGATGAAGAGGAAAATGAAGATCTGGATGAAGATAATGACAGTCTGGAGGGATCATCTGGCAAACCCGGACGCACAAACCAATCCCTGCACCCACAAATCCTTGAGGAGAGCGATAACGATTTTTAACATCGTCAAAAACTCAATACATAATGACTTAAAATATGCTGTATTGATTTAAATATTCATGATTCTTATGTAAATTGCTGCATTGAagttaaatgtatgtaaatacacATCTACATCTCATTTGTATTCCTGTTAAATCTTAAATCTCGTTAATTTGTGAGTTTGAGAGGGTTTTTGTTTGActaaaaatgctttattaaggCTGTCAgtaatgttatataaaatatattacattttattttaatacataaacGTAATGATATGTCACAA
>TCONS_00046681
acttagcaaccgccgccgtgcttcctgccattcccagtcctagcgcagtcacgttggctttctcaagccaacatcaaagtttatcaataaactttaggttctagtttagGCTTTGTTATTGATAGTAACTCTATTATGTAATAACTTTAATACCTTTATCATGTAGTCCAGCGTTTATGGATGAATATGAGAAGATCGAGGAGGACTTGGAGAAACAGTACCAGACGTATGTGGAGAAATATCGTAACCTGAGCTTCCTGGAGCAGCAGCTGGATGACTATCACAGAGTAGAGCAGGAGCGATTCGAGGAAGCAGAAATGGCAATGAAAATGAGACAGAACAAAttaaaagaggaggagaagaggCTTATGAGGAGCGGAGTAGCCAGAGATGAAGATTCGGACGTGGACATACCAGAGGATGAAGGCTCTGACAGTGACATAGATGACGGACAGCAGGCCAGACCGCACCACCCTCGACACACACAAATATCAGGTCGAGGTGGCGCTCGATTCATCGGCAGTATGAGAGGAGGAGACAGCGAAGAGACAGAGGACAGTGAGATTGACGTAGATGACGACGAcgaggatgatgatgaagacgGTGAGGAAGATGAAGAGGAAAATGAAGATCTGGATGAAGATAATGACAGTCTGGAGGGATCATCTGGCAAACCCGGACGCACAAACCAATCCCTGCACCCACAAATCCTTGAGGAGAGCGATAACGATTTTTAACATCGTCAAAAACTCAATACATAATGACTTAAAATATGCTGTATTGATTTAAATATTCATGATTCTTATGTAAATTGCTGCATTGAagttaaatg

Function

symbol description
cluap1 Acts upstream of or within cilium assembly; kidney development; and photoreceptor cell maintenance. Predicted to be located in cell projection and nucleus. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Orthologous to human CLUAP1 (clusterin associated protein 1).

GO:

id name namespace
GO:0045494 photoreceptor cell maintenance biological_process
GO:0001822 kidney development biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0042995 cell projection cellular_component
GO:0030992 intraciliary transport particle B cellular_component
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005929 cilium cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1943 Acts upstream of or within cilium assembly; kidney development; and photoreceptor cell maintenance. Predicted to be located in cell projection and nucleus. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Orthologous to human CLUAP1 (clusterin associated protein 1).

Ensembl:

ensembl_id ENSDARG00000079110

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046679 False 1760 mRNA 0.43 12 37466770 37484123
TCONS_00046680 False 823 mRNA 0.41 6 37466826 37472727
TCONS_00046681 True 832 lncRNA 0.44 5 37467001 37472971

Neighbor

gene id symbol gene type direction distance location
XLOC_023644 CU469584.1 coding downstream 62304 37361189 ~ 37404466 (-)
XLOC_023643 tsr3 coding downstream 128031 37329119 ~ 37338739 (-)
XLOC_023642 pdpk1b coding downstream 140534 37301852 ~ 37326236 (-)
XLOC_023641 NA coding downstream 171669 37289468 ~ 37295101 (-)
XLOC_023640 CABZ01055522.1 coding downstream 178978 37274759 ~ 37287792 (-)
XLOC_023646 h1-0 coding upstream 82906 37567029 ~ 37568359 (-)
XLOC_023647 zgc:112496 coding upstream 147509 37631632 ~ 37640705 (-)
XLOC_023648 anks3 coding upstream 177017 37661140 ~ 37680917 (-)
XLOC_023649 zgc:112185 coding upstream 196959 37681082 ~ 37688398 (-)
XLOC_023650 si:ch211-231f6.6 coding upstream 211645 37695768 ~ 37698796 (-)
XLOC_023665 dre-mir-735 misc upstream 693838 38177961 ~ 38178027 (-)
XLOC_023637 NA non-coding downstream 295846 37170317 ~ 37170924 (-)
XLOC_023636 NA non-coding downstream 389953 37069683 ~ 37076817 (-)
XLOC_023635 NA non-coding downstream 416859 37046594 ~ 37049911 (-)
XLOC_023651 NA non-coding upstream 221503 37705626 ~ 37708051 (-)
XLOC_023652 NA non-coding upstream 240851 37724974 ~ 37726949 (-)
XLOC_023658 BX001030.2 non-coding upstream 601194 38085317 ~ 38092588 (-)
XLOC_023660 BX001030.1 non-coding upstream 614773 38098896 ~ 38099675 (-)
XLOC_023667 NA non-coding upstream 713715 38197838 ~ 38215482 (-)

Expression


Co-expression Network