XLOC_023643 (tsr3)


Basic Information

Item Value
gene id XLOC_023643
gene name tsr3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37329119 ~ 37338739 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046675
GTCCTATTGCGTTTTTACGTTTTTGATTATTACGTGTATGCTATGTATAACATGTGTGTAGTATTGAAGCTAAAATATCCTTTACAATTAAATAGTCAAAGCTAAATCTTTATAACTATGTCTGtgaataaattagttttattttggttacAGCAACAGCCATGTTTCATGACGTCATCGTGTTTTGGCCTCACGAAACGGCAGCGTGTCAGAATTAATCTTTAAAGTGTGCTCTAAAAGcacataaacatttatatttaagccATGGTCGGCGTAAAGTCGGTATAGTGGCGTGGTGTACACTGTAAAGATCTTAAACCAATAAGTCGCTCACACACGTGCGAAAGTTAAAGACTTTTAAACCTAAAATAAGCTCGAATTCAGACATGGGGCGTAAAAGACAGGGTAAATGTGAGCGATCTGTCCACAAGGGTAAAGACACTCGACACAGGATGAAGGGGAAATCATTGGACACATTCACAGAGGAGATGCACGAGGCTCTGCAAGCCAGTGAGCATGCAGATTCAGAGGCGGCCGGAGGGGTGAAGTTGCCCTGTCCGCTGGCCATGTGGGATCTGGGTCACTGTGACCCTAAACGCTGCACAGGACGGAAGCTAGCAAGGAAAGGTTTAGTGCGCTGCCTACGACTCAACCAGCGCTTTAATGGCCTGATACTCAGCCCTATGGGAACCAAATACGTCACACCTGCCGACAGGGAGATTGTGGCACATGGTGGTCTGGCCGTGATTGACTGTTCATGGGCTCGTCTTGAAGACACACCTTTCAGCAAAATGATTGGCTCTCATCCGAGGCTTTTGCCGTATTTGGTCGCAGCAAATCCTGTCAACTATGGAAAGCCTTGCAAACTGTCCTGCGTTGAGGCGTATGCCGCCACCTTCTGCATTGTGGGTTTCCGTGACCTTGCTGTGCTCCTGTTGAGGAAGTTTAAGTGGGGTTTGGGATTTTTGGAGCTGAACAAGACTCTTCTAGAGCGTTAcgcttccagccaatcagaagagGAGTTGCTGGCTGTGGAGAAAGAGTTTCTGAGTGCCACACCTCAGGAAGAGGAGATCGATCCTTTTGACGTGGACTCAGGGAGAGATTTTGTGAACCTTAACAGACCAGTCCAGGCTAAATATGATGACAGTGACAATAcatcagaagaagaagatgatgatgaagaagaagaagatgatgatgatgatgatgaggaggaggaggaggaagaacaGAAGAGCGAGGAGCAAGAAAATGATCTGAAGTCTGCAGTTGTGTAATTTTAAAAGGAAACATTGAGGGTTGATTAAGTAACACTGACCTACACTTGACATAAGAAAACTTCTGTTTTCTGAGTGTTTGCTAATGTCGAGATGTTACCGTGTCGTGATTTGAGTCAGCAACTTCCCTAAAGACTTTTAATCATGTGTTAAATGAGCTTTTTTTGCTCTCGAGAAGCATCTTCTCAAACTATTAATGTAACATGCACAAAACTAAATGTGCCGACTGTTTATAAGTAGAATAAAATGTCTGAGTACAATTTTAAATGGCAATTTTAGTGTATTTAATACAAGTTTTCCAGATGTTTTGTTGATTGGATTTGAATAAATAACACATGTAACACaagtaacacattttttttaagtaagtaaAAAGCTAGTAAGCTAGTTTGATTACCACA
>TCONS_00046676
CAGCCACTGACAAATAACATATAAGAACACCACAGCTGTTATGAATATTATTAGCTAAAACTCTACATGTAAAACCAAATACATTAAAACACTTTCAGTTCCGCGTGTTCAGCGCTGTGTTGATTTAATTATCTGATAATACAATTAGAAGCCAGTGAGCATGCAGATTCAGAGGCGGCCGGAGGGGTGAAGTTGCCCTGTCCGCTGGCCATGTGGGATCTGGGTCACTGTGACCCTAAACGCTGCACAGGACGGAAGCTAGCAAGGAAAGGTTTAGTGCGCTGCCTACGACTCAACCAGCGCTTTAATGGCCTGATACTCAGCCCTATGGGAACCAAATACGTCACACCTGCCGACAGGGAGATTGTGGCACATGGTGGTCTGGCCGTGATTGACTGTTCATGGGCTCGTCTTGAAGACACACCTTTCAGCAAAATGATTGGCTCTCATCCGAGGCTTTTGCCGTATTTGGTCGCAGCAAATCCTGTCAACTATGGAAAGCCTTGCAAACTGTCCTGCGTTGAGGCGTATGCCGCCACCTTCTGCATTGTGGGTTTCCGTGACCTTGCTGTGCTCCTGTTGAGGAAGTTTAAGTGGGGTTTGGGATTTTTGGAGCTGAACAAGACTCTTCTAGAGCGTTAcgcttccagccaatcagaagagGAGTTGCTGGCTGTGGAGAAAGAGTTTCTGAGTGCCACACCTCAGGAAGAGGAGATCGATCCTTTTGACGTGGACTCAGGGAGAGATTTTGTGAACCTTAACAGACCAGTCCAGGCTAAATATGATGACAGTGACAATAcat

Function

symbol description
tsr3 Predicted to enable S-adenosyl-L-methionine binding activity and transferase activity, transferring alkyl or aryl (other than methyl) groups. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm. Orthologous to human TSR3 (TSR3 ribosome maturation factor).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0000455 enzyme-directed rRNA pseudouridine synthesis biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:1904047 S-adenosyl-L-methionine binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040718-63 Predicted to enable S-adenosyl-L-methionine binding activity and transferase activity, transferring alkyl or aryl (other than methyl) groups. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm. Orthologous to human TSR3 (TSR3 ribosome maturation factor).

Ensembl:

ensembl_id ENSDARG00000038567

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046675 False 1681 mRNA 0.42 6 37329119 37338162
TCONS_00046676 True 805 mRNA 0.48 6 37329639 37338739

Neighbor

gene id symbol gene type direction distance location
XLOC_023642 pdpk1b coding downstream 2883 37301852 ~ 37326236 (-)
XLOC_023641 NA coding downstream 34018 37289468 ~ 37295101 (-)
XLOC_023640 CABZ01055522.1 coding downstream 41327 37274759 ~ 37287792 (-)
XLOC_023639 ube2ib coding downstream 57003 37257596 ~ 37272116 (-)
XLOC_023638 cog7 coding downstream 103242 37195463 ~ 37225877 (-)
XLOC_023644 CU469584.1 coding upstream 22450 37361189 ~ 37404466 (-)
XLOC_023645 cluap1 coding upstream 128031 37466770 ~ 37484123 (-)
XLOC_023646 h1-0 coding upstream 228290 37567029 ~ 37568359 (-)
XLOC_023647 zgc:112496 coding upstream 292893 37631632 ~ 37640705 (-)
XLOC_023648 anks3 coding upstream 322401 37661140 ~ 37680917 (-)
XLOC_023665 dre-mir-735 misc upstream 839222 38177961 ~ 38178027 (-)
XLOC_023637 NA non-coding downstream 158195 37170317 ~ 37170924 (-)
XLOC_023636 NA non-coding downstream 252302 37069683 ~ 37076817 (-)
XLOC_023635 NA non-coding downstream 279208 37046594 ~ 37049911 (-)
XLOC_023632 NA non-coding downstream 449992 36872875 ~ 36879127 (-)
XLOC_023651 NA non-coding upstream 366887 37705626 ~ 37708051 (-)
XLOC_023652 NA non-coding upstream 386235 37724974 ~ 37726949 (-)
XLOC_023658 BX001030.2 non-coding upstream 746578 38085317 ~ 38092588 (-)
XLOC_023660 BX001030.1 non-coding upstream 760157 38098896 ~ 38099675 (-)

Expression


Co-expression Network