XLOC_023640 (CABZ01055522.1)


Basic Information

Item Value
gene id XLOC_023640
gene name CABZ01055522.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37274759 ~ 37287792 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046673
AGACACAGacataaaaacatacacagatgcacaaacacacatacacacacaaaaacacacacacaaaaccaaaaaaatacactcaaacacacactaacagacacacacatactcaacTTGCACTcaaacacactaacacacacacatacaagcacacaaacacacacagtcatttaAACGCACATCCACACACATAATCTTACACACAGTcacagatacacaaacacacatagacacagacataaaaacacacacacacagacatacaaaaGCACAGAGATACATACACACGCATATtctcaaacacacagacataaaaaacacacacatgcaaacacacacagagactgtGACTAAAGCATCGAATCTGTcctcgatgtgtgtgtgtgtgtgtccatcagGAGCTCTTGAAGAGGCCGAGTTCTACAACATCACCTCACTAATAAAACTGATCAAGGAGAAAATCATCGAAAGAGACGCCAAGAGCACACACACGCCAGTCAAGCATGTGTACCGAGTGCTGCAGTGTCAAGAAGAAGAGCTGACGCAGATGGTCTCCACCATGTCGGACGGGTGGAAGTTTGAGCAGCTTGTCAGTGTAGGTTATGGGCGGGCCCAGAAGTCAGAGTTTTTCCTGATTGTGTCTCGGGAGGTGAAGGGGGAGGAGTCAAGCCAAACTCACCCCGCCCACAGTGGAGAGCTGGTCAGCATCGGGTCGTCCTATAACTATGGTAATGAGGATCAGGCCGAGTTCCTGTGTGTCGTTTCTAAAGAGCTGCACAACCAGTCGTACATGAGCAGCTCTCAGCCCAGTGAGAAAGCCAAGATTCTGCAGGAGCGCGGCTCTAGAATATGAtcatctgtgtttttgaggcaTATCAGTTGTTTCTCTATGAGCTTATTCTTCTCACGCCTTGAGCACCGGATACCAGAAGAGCACCAGAAGAGCCGATTCGCAGTCCCAACCGTGCCTGAGGACACACAAGCGGATTCTCGGCTCAGGATCGGGACTAAAGTAAACCTCAGGGATCATCGGGACACTGCACTGAGTCACAGCTCACTCCTTCAGCAGTCAGTAGAATCAGCATATATGCTCTGCACATACAACAGTGGGATCCCCATACAGAAATCTGATGTACAGTCAccgccacttcattaggtacaccttactagtatcgggttggaacAAGCTCGAATCCTTCTTGTCTGACCTCTAGcaattgcgcccacagaactgccactcactgaatattttccctttactggaccattctctgtaaaccctagagatggttgtgcgtggaaatcccagtagatcagcagtttctgaaatactcagacagcccgtgtggcaccaacaaccatgccatgttcatagtcacttaaatcccttttcttccccattctgatgctcagtttgaactgcaatagatcgtcttgaccatgtccacatgcctaaatgcattgagttgctgccatgtgattggctgattagaaatttgcgttgacAAGCAGtcgaacaggtgtacctaataaagtggccggtgagcttATATACAAATTCCAAAACAATTCACAACACGGTTGCATttggtaaagggatagttcacccagaaattacaATATACTcagtatttactctccctcaagtggttatgaaatgtttctttatttcgttgaacacaaaagaagatattttgaagaatgctgaaaaccggtaaccatagACTTTCCATAGTaggcaaaacaaatactatggaggtcaatggctacTAGATTCTGacatttttgtgttcaacagtataaataaatgcataaagagttaagggtaagtaaattatagcagatttttgttatttttgggtgaactatccctttaatgtaagttaatgtatttactaacatgaacaaacaatgaataatacttttattacagtatttttcatcttttttttggtTATAAAATGTGGattttactaatgcattagtaaGTGTTGCATTATGATTATAAAGTGCTgtgcaagtattgttcattattagttcataatAGTAAATgcactaatgaaaccttattataGCTTCATATATGACACACAAGCTCAAATATGAATTTTACATAGATCAAATATGTGATTTAAGGAACATTAAATATTGCAAACATGGCCGCTTACATATATACACCACCtgatgacaaaagtcttgttgtcgatcctaGCTGTAGGAGctgtaaataataacttgacttctagttgaacatttggaaaagtggcagaaggttgatttttcccatgaatcatctgttgagctgcatcccaatcatcacaaatactgcagaggacctactggaaccagcatggactcaagattctcatagaaatcagtcaagtttggttaaggaaaaatcatggtttggggttaaatttcaatatgggggcgtgcgagagatctgcagagtggatggcaacatcaacagcctgaggtatcaagacatttgtgctgcaggagagggcaaattctccagcaggatagcgctcctcatacttcagcctccacatcaaagctcctgaaagcaaagaagatgctccaggattggccagccaagtcaccagacatgaacattattgagcatgtctggggtaagatgaaggaggaggcattgaagatgaatccaaagagtcttgatgaactctgggagtcctgcaggaacgctttatttgctgttccagatgactttattaatcagtgatttgagtcagtgcagagatgtatggatgcagtcctccaagctcatgatggagtcagacacaatattcattctgtctccactgcagcaggactttatattctatactggacattatttctgttcaatgacaagacttttgtctaagcaaagttagaccttagtgtcctgattaaatcattacaaatcaagacatgatcatatttgatttttggtaaaataagcgtaatctagaggcctttgacaaatcaagttattatttgttgttcctaaagctTTTATAGGACtggacttttgtcatgtagtgtatatatatattgtacatataTGCTCAAATATATGAAATACACATATATCACCATATCATTCAACAATAATTCAAAACTACAACGTTCATTTGTTCTAAACCTCACTTAGCCTTTTAAAGGCTGAATAAAAGTTTTCATTTCTTTCTAAACTTCTCGCTGACACCAGGATTTTAAACGAAACACATTTTACGGTATGTTTTTTACTCCTTTTTAATGTGAAAAATATTGCTTTTGCACTACTATTGcgctgtgattattattattattattatcatcacacaAGTGATTTTTCAGTAAATGCACTCGTCATTtagaaatgtgtattttattactGCTGTACTGTCGGCTGGACTTTAAAgggaagcagtttttttttctgtcaggagTAGAGACAGGATTGAGGAAGCATTAAATCACCGTCTCTGACTTTGCACATTTTGATATAAACACTATTAGGCCTACATGTTATATATAAGGTAAGGCTGTGTgcgtttatatgtatttttgaaaatgttaacaAGATCTCACATCACTAATGCAGCTGAATGTAGcagcacacacacccacacacacacacacttttaagaTATAAATGCCTTTTTAACAAATAGCTGGGTGTCTGTGAGcttttttac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098817

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046673 True 3686 mRNA 0.40 5 37274759 37287792

Neighbor

gene id symbol gene type direction distance location
XLOC_023639 ube2ib coding downstream 2643 37257596 ~ 37272116 (-)
XLOC_023638 cog7 coding downstream 48882 37195463 ~ 37225877 (-)
XLOC_023637 NA coding downstream 103835 37170317 ~ 37170924 (-)
XLOC_023636 NA coding downstream 197942 37069683 ~ 37076817 (-)
XLOC_023635 NA coding downstream 224848 37046594 ~ 37049911 (-)
XLOC_023641 NA coding upstream 1676 37289468 ~ 37295101 (-)
XLOC_023642 pdpk1b coding upstream 14060 37301852 ~ 37326236 (-)
XLOC_023643 tsr3 coding upstream 41327 37329119 ~ 37338739 (-)
XLOC_023644 CU469584.1 coding upstream 73397 37361189 ~ 37404466 (-)
XLOC_023645 cluap1 coding upstream 178978 37466770 ~ 37484123 (-)
XLOC_023665 dre-mir-735 misc upstream 890169 38177961 ~ 38178027 (-)
XLOC_023632 NA non-coding downstream 395632 36872875 ~ 36879127 (-)
XLOC_023628 NA non-coding downstream 575752 36689295 ~ 36699007 (-)
XLOC_023651 NA non-coding upstream 417834 37705626 ~ 37708051 (-)
XLOC_023652 NA non-coding upstream 437182 37724974 ~ 37726949 (-)
XLOC_023658 BX001030.2 non-coding upstream 797525 38085317 ~ 38092588 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G221359 NA non-coding NC_053133.1 CM020930.1 20469146 ~ 20469453 (-)
mexican tetra (Astyanax mexicanus) G220781 NA non-coding NC_035921.1 CM008324.1 31547740 ~ 31548009 (+)