XLOC_023639 (ube2ib)


Basic Information

Item Value
gene id XLOC_023639
gene name ube2ib
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37257596 ~ 37272116 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046672
ATTAGACTGCTTCAGACCCGAATGTGTTTTCGGGAGGGAAACTCCTTTGCTTTGGTTCCGAGGCAAACGCGGTTCGAGTGAGCGGCCCACGAGACGATAAACACTGGGATTCACGCGAAACAGTGGTCATGTCTGGCATTGCTCTGAGTCGACTTGCACAGGAGCGCAAAGCATGGAGGAAAGACCATCCATTCGGCTTTGTTGCTGTGCCGATGAAAAACCCCGATGGTACCATGAACCTTATGAACTGGGAATGTGCTATTCCAGGAAAGAAGGGGacTCCATGGGAAGGAGGTCTGTTTAAGTTACGGATGCTGTTTAAAGACGATTACCCTTCATCACCCCCAAAGTGCAAATTTGAGCCTCCGCTGTTTCATCCGAATGTGTATCCGTCAGGAACAGTGTGTCTTTCCATCCTGGAGGAGGATAAAGACTGGAGACCCGCCATCACAATTAAACAGATCCTGTTGGGGATTCAGGAGCTTCTAAATGAACCGAACATCCAGGATCCAGCTCAGGCAGAGGCGTACACCATATACTGTCAGAATAGAGTGGAGTACGAGAAGAGAGTTCGTGCACAGGCCAAAAAGTTCTCCCCGTCGTAAAGCGACACCGAGAGACGGGACGAATGGAAAGAGGGAAGATGTGGAAAAACAAAACTCATGCTATCCTCTCACCGGGACTAAAAAAAAAGGACTTTAAAACATGACGTCTGTGCCATCAAATCCCTAACCATCCtccaaatccacacacacacacactcgcacacacacccCTTCACTTCATTCGCTCTGTTCCCCTTCTCGATCAGATGGACTGCTGGGATTTTAGCTCTTGATTGGTTCGGCgtgtcagtctgtgtgtgtgtgcgcgcgcatacATGAACTCgtcattttattatgtttgtgaAAAGCTCCGTTTTCccagagtgagtgtgtgtgtgtgtatatgtgtgtgcgacTCTGGTTTATGCTGGGTGTTTTTGCGTTGTGTATGTGGGATTAGTGCCTCATGGTGAAGTTTTCCCTCTGAATGCTGATCTAGGACCAGTTTCCTCTCCGTTGGccctgtttgtgtgttttgagcaGCCTGATCTGTCTAGATTGGCGGTCCAGATAATTGCACCATTGAGCAGCAGAACCAGAGTCCACTTCTCTTAAACATGCTGTACatgcttttcttgtttgtttgatgGGAACATGTGTCCTGTGTTCACACTGATTGTGTCTGTATGTTTAATAAAGCTCTTTCT

Function

symbol description
ube2ib Enables SUMO transferase activity. Acts upstream of or within several processes, including embryonic heart tube development; hematopoietic stem cell homeostasis; and protein sumoylation. Predicted to be active in nucleus. Is expressed in several structures, including immature eye; nervous system; neural crest; pectoral fin bud; and pharyngeal pouch. Orthologous to human UBE2I (ubiquitin conjugating enzyme E2 I).

GO:

id name namespace
GO:0036306 embryonic heart tube elongation biological_process
GO:0007275 multicellular organism development biological_process
GO:0061484 hematopoietic stem cell homeostasis biological_process
GO:0007049 cell cycle biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0007059 chromosome segregation biological_process
GO:0031099 regeneration biological_process
GO:0051301 cell division biological_process
GO:0007088 regulation of mitotic nuclear division biological_process
GO:0016925 protein sumoylation biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0061656 SUMO conjugating enzyme activity molecular_function
GO:0019789 SUMO transferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990614-17 Enables SUMO transferase activity. Acts upstream of or within several processes, including embryonic heart tube development; hematopoietic stem cell homeostasis; and protein sumoylation. Predicted to be active in nucleus. Is expressed in several structures, including immature eye; nervous system; neural crest; pectoral fin bud; and pharyngeal pouch. Orthologous to human UBE2I (ubiquitin conjugating enzyme E2 I).

Ensembl:

ensembl_id ENSDARG00000007438

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046672 True 1252 mRNA 0.48 7 37257596 37272116

Neighbor

gene id symbol gene type direction distance location
XLOC_023638 cog7 coding downstream 31719 37195463 ~ 37225877 (-)
XLOC_023637 NA coding downstream 86672 37170317 ~ 37170924 (-)
XLOC_023636 NA coding downstream 180779 37069683 ~ 37076817 (-)
XLOC_023635 NA coding downstream 207685 37046594 ~ 37049911 (-)
XLOC_023634 dnaaf3 coding downstream 254019 36995295 ~ 37003577 (-)
XLOC_023640 CABZ01055522.1 coding upstream 2643 37274759 ~ 37287792 (-)
XLOC_023641 NA coding upstream 17352 37289468 ~ 37295101 (-)
XLOC_023642 pdpk1b coding upstream 29736 37301852 ~ 37326236 (-)
XLOC_023643 tsr3 coding upstream 57003 37329119 ~ 37338739 (-)
XLOC_023644 CU469584.1 coding upstream 89073 37361189 ~ 37404466 (-)
XLOC_023665 dre-mir-735 misc upstream 905845 38177961 ~ 38178027 (-)
XLOC_023632 NA non-coding downstream 378469 36872875 ~ 36879127 (-)
XLOC_023628 NA non-coding downstream 558589 36689295 ~ 36699007 (-)
XLOC_023651 NA non-coding upstream 433510 37705626 ~ 37708051 (-)
XLOC_023652 NA non-coding upstream 452858 37724974 ~ 37726949 (-)
XLOC_023658 BX001030.2 non-coding upstream 813201 38085317 ~ 38092588 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G200325 NA non-coding NC_047606.1 CM018552.1 21384076 ~ 21386033 (+)
tiger barb (Puntius tetrazona) ube2ib ube2i,LOC107677193 misc NC_056722.1 CM032091.1 3207551 ~ 3211740 (-)