XLOC_023634 (dnaaf3)


Basic Information

Item Value
gene id XLOC_023634
gene name dnaaf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 36995295 ~ 37003577 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046670
ATGAGCGCTGGTCGGACTTTTGAGGGTGCGGGATGTGTGACCTGGTGGGGATTTGGACCAGCTCGAGACCTGCTGAACTcagacacacacaaagtGAGGCTACAAGAAGAGCTTAATGTTTTGCTCGTGGGCAGTGGAGACCCCAGACACATCCTGAAGACCATCACTGGACTCACACACTCGGATACACTACATGTTTGGGTGATTGAGAACAGTATGGAGGTTATTGCCAGACAACTATTACTACTCTATATATCACTTCTACCCCCTGATAAGATGAGTGTGCACAAGAAGACTGAGGTGTTTCTGGAGGTGTTTGGAAACTTAGAGATCCGCAAAGAGACAGAAGAGAGTGTAAAAAAGGCCGCAGCTCAGCTCTCCATCTCCATCACTTACTCTCTGTCCTCAGACTCTCTCAGTCACTCCTGCCTCGACACTAGCTTACTGAAgTTTAAGGAGCGAGATGAGCTGGTGCGGATCTTTAAGCTGTGGGAACGGCCTCCATCAGCTCCAGCCAGTGTTAGTAAAGTGTGGGATGCTCGTGTTCGGCAGCATCTGGGCTCTCGATACGACTCTCGACAGGGAGCATTCGACTGGGATCTCAACATGAAGCTACATCAGAGAGGATGTGGCGTCATCAACAAACATCAGTATGCCAAATGGAGAGAAACAGGCGTGACCTTTGAGATGAGGGAGGGGCTTTaccaaacagccaatcagagtctgcTTTCAACTCGAGTCTTCAACCATAGAGGAAATGGGGTTGCTTTACGAGGATACTGGGGCGACATCGTCTCCAGTCCATATCTGTCCTTCGGCATTGAGACTGAAAACAAAGAGCTGCTGAAGACACAGAACAATCATTATGTGAAGACGGCTCAGGATATTTCTGAAGTGAACTTGCTGGAGTTGTTTGAGTGTCTCGCCGCTAGAGGGAGATCTCCACTAAATGAAGATCCACCAAACACCTCCAGTTCCTGCTGTCAATCCACAGAAAGTCGCAAAACTGAAGAAAACTCACAGAGTGATCCGTCTGCTTCTCAAACTCAACCTGTGGAACATTCGCCAACTCAAGAGCTTGATCTGCTGAATGTGAATGGAGTGAAAGTGTCATTTCTGTCTCCAGACTCACTCAGCAAACTTCCTCTCAAAAGCAAATACAGGAACCTGTTCAACACCATCTTCTGTTCAGCAAGTATGGTTCATCAGCTGGATTCTGCTCTGAGAGAGATCGCAGCGCCTGATGCTGCTCTGGTTATAGAGTTAGCAACATTCCTGTTGGATCTTTCAAAAGAGCAAGTGTCAGGTTTTGCTGTCAAAGTGAAGGAGATCGCTGAAGAATCAGGATTTACTCCAGCACATGACCAGAACAGTGACAAATATGCAGTATTCACACAGAAAAACAACTGA

Function

symbol description
dnaaf3 Involved in motile cilium assembly. Acts upstream of or within axonemal dynein complex assembly and cilium movement. Predicted to be located in dynein axonemal particle. Is expressed in floor plate spinal cord region; neuromast; peripheral olfactory organ; and pronephros. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 2. Orthologous to human DNAAF3 (dynein axonemal assembly factor 3).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0044458 motile cilium assembly biological_process
GO:0030030 cell projection organization biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-091204-296 Involved in motile cilium assembly. Acts upstream of or within axonemal dynein complex assembly and cilium movement. Predicted to be located in dynein axonemal particle. Is expressed in floor plate spinal cord region; neuromast; peripheral olfactory organ; and pronephros. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 2. Orthologous to human DNAAF3 (dynein axonemal assembly factor 3).

Ensembl:

ensembl_id ENSDARG00000092662

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046670 True 1410 mRNA 0.47 11 36995295 37003577

Neighbor

gene id symbol gene type direction distance location
XLOC_023633 dnaaf3l coding downstream 85071 36903172 ~ 36910224 (-)
XLOC_023632 NA coding downstream 116168 36872875 ~ 36879127 (-)
XLOC_023631 fam171a2b coding downstream 168791 36812640 ~ 36826504 (-)
XLOC_023630 dcakd coding downstream 192404 36798558 ~ 36802891 (-)
XLOC_023629 si:ch73-334d15.1 coding downstream 267373 36721341 ~ 36727922 (-)
XLOC_023635 NA coding upstream 43017 37046594 ~ 37049911 (-)
XLOC_023636 NA coding upstream 66106 37069683 ~ 37076817 (-)
XLOC_023637 NA coding upstream 166740 37170317 ~ 37170924 (-)
XLOC_023638 cog7 coding upstream 191886 37195463 ~ 37225877 (-)
XLOC_023639 ube2ib coding upstream 254019 37257596 ~ 37272116 (-)
XLOC_023665 dre-mir-735 misc upstream 1174384 38177961 ~ 38178027 (-)
XLOC_023628 NA non-coding downstream 296288 36689295 ~ 36699007 (-)
XLOC_023625 NA non-coding downstream 415828 36574093 ~ 36579467 (-)
XLOC_023621 NA non-coding downstream 567514 36275575 ~ 36427781 (-)
XLOC_023641 NA non-coding upstream 285891 37289468 ~ 37295101 (-)
XLOC_023644 CU469584.1 non-coding upstream 357612 37361189 ~ 37404466 (-)

Expression


Co-expression Network