XLOC_023633 (dnaaf3l)


Basic Information

Item Value
gene id XLOC_023633
gene name dnaaf3l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 36903172 ~ 36910224 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046669
ATGAGCGCTCGTGGGACTGTTGAGGGTGCGGGCTGTGTGACCTGGTGGGGATTTGGACCAGCTCGAGACCTGCTGAACTCAGacacacacagactgagGCCACATGGAGAGCTGAATGTTTTGCTGGTGGGCAGTGGAGACCCCAGACACATCCTGAAGACCATCACTGGACTCATACACTCGGATACACTACATGTTTGGGTGATTGAGAACAGTATGGAAGTTCTTGCCAGACAACTATTACTGCTGTATATATCACTTCTGCCCCCTGAAAAGATGAGTGTGCACAAGAAGACTGAAGTGTTTCTGGAGGTGTTTGGAAACTTAGAGATCCGCAAAGAGGCAGAAGAGAGTGTAAAACAGGCTGCAGCTCAGCTCTCCATCTCCATCACTGACTCTCTGTCCACAGACACTCTCAGTCACTCCTGCCTCGACACCAGCTTACTGAAGTTTAAGGAGAGAGATGAGCTGGTGCGGATCTTTAAGCTGTGGGAACGGCCTCCGTCAGCTCCAGCCAGTGTTAGTAAAGTGTGGGACGCTCGTGTTCGGCAGCATCTGGGCTCTCGATACGACTCTCGACAGGGAGCATTCGACTGGGATCTCAACATGAAGCTACATCAGAGAGGATGTGGCGTCATCAACAAACATCAGTATGCCAAATGGAGAGAAACAGGCGTGGCCTTTGAGATGAGGGAGGGGCTTTACcagacagccaatcagagtctgcTTTCAACTCGAGTCTTCAACCATAGAGGAAATGGGGTTGCTTTACGAGGATACTGGGGCGACATTGTCTCCAGTCCATATCTGTCCTTCGGCATTGAGACTGAAAACAAAGAGCTGCTGAAGACACAGAACAATCATTATGTAAAGACGGCTCAGGATATTTCTGAAGTGAATGTGCTGGAGTTGTTTGAGTGTCTCGCCGCTAGAGGGAGATCTCCACTAAATGATGATCCACCAAACACCTCAAGTTCCTGCTGTCAATCCACAGAAAGTCTCAAAACAGAAGAAAACTCACAGAGTGATCCGTCTGCTTCTCAAACTCAACCTGTGGAACATTCGCCAACTCAAGAGCTTGATCTGCTGAACGTGAATGGAGTGAAAGTGTCATTTCTGTCTCCAGACTCACTCAGCAAACTTCCTCTCAAAAGCAAATACAGGAACCTGTTCAACACCATCTTCTGTTCAGCAAGTATGGTCCATCAGCTGGATTCTGCTCTGAGAGAGATCGCAGCGCCTGATGCTGCTCTGGTTATAGAGTTAGCAACCTTCCTGTTGGATCTTTCAAAAGAGCAAGTGTCGGGTTTTGCTGTCAGAGTGAAGGAGATCGCTGAAAAATCAGGATTCACTCCAGTGCACAACCAGAACAGTGACAAATATGCAGTATTCACACAGAAAAACAACTGA

Function

symbol description
dnaaf3l Predicted to act upstream of or within axonemal dynein complex assembly. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 2. Orthologous to human DNAAF3 (dynein axonemal assembly factor 3).

GO:

id name namespace
GO:0070286 axonemal dynein complex assembly biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-150903-1 Predicted to act upstream of or within axonemal dynein complex assembly. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 2. Orthologous to human DNAAF3 (dynein axonemal assembly factor 3).

Ensembl:

ensembl_id ENSDARG00000036304

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046669 True 1410 mRNA 0.48 11 36903172 36910224

Neighbor

gene id symbol gene type direction distance location
XLOC_023632 NA coding downstream 24045 36872875 ~ 36879127 (-)
XLOC_023631 fam171a2b coding downstream 76668 36812640 ~ 36826504 (-)
XLOC_023630 dcakd coding downstream 100281 36798558 ~ 36802891 (-)
XLOC_023629 si:ch73-334d15.1 coding downstream 175250 36721341 ~ 36727922 (-)
XLOC_023628 NA coding downstream 204165 36689295 ~ 36699007 (-)
XLOC_023634 dnaaf3 coding upstream 85071 36995295 ~ 37003577 (-)
XLOC_023635 NA coding upstream 136370 37046594 ~ 37049911 (-)
XLOC_023636 NA coding upstream 159459 37069683 ~ 37076817 (-)
XLOC_023637 NA coding upstream 260093 37170317 ~ 37170924 (-)
XLOC_023638 cog7 coding upstream 285239 37195463 ~ 37225877 (-)
XLOC_023665 dre-mir-735 misc upstream 1267737 38177961 ~ 38178027 (-)
XLOC_023625 NA non-coding downstream 323705 36574093 ~ 36579467 (-)
XLOC_023621 NA non-coding downstream 475391 36275575 ~ 36427781 (-)
XLOC_023624 NA non-coding downstream 536406 36364436 ~ 36366766 (-)
XLOC_023641 NA non-coding upstream 379244 37289468 ~ 37295101 (-)
XLOC_023644 CU469584.1 non-coding upstream 450965 37361189 ~ 37404466 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01158912_00000057_00000955 NA coding CI01158912 null 57 ~ 955 (+)